PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Psi004976 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||||||
Protein Properties | Length: 186aa MW: 20377.4 Da PI: 4.7045 | ||||||||||||
Description | ERF family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.4 | 2.7e-16 | 2 | 47 | 7 | 56 |
AP2 7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 r+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a++ a+ +l+ge Psi004976 2 RQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAAFAYDTAAYQLRGE 47 5566.**********955...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.481 | 1 | 54 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.66E-20 | 2 | 55 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.1E-9 | 2 | 47 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-27 | 2 | 60 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.53E-29 | 2 | 56 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.3E-28 | 2 | 55 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
XRQRHWGKWV AEIRLPRNRT RLWLGTFDTA EEAAFAYDTA AYQLRGEYAR LNFPDLRYLL 60 LSNSDNGSPN VLSSPGNALS VLKSSVDAKL QAICQRLSQE NSSENRLMAQ TANNEALENV 120 KCEVSGSSNS STICGAESAS TSPSKCEVDS SALQKAPSFS IFAELDDCLT KMPSLDPEVI 180 QDVMSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-16 | 2 | 54 | 10 | 63 | ATERF1 |
3gcc_A | 2e-16 | 2 | 54 | 10 | 63 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Psi.8589 | 0.0 | shoot |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019177314.1 | 5e-45 | PREDICTED: ethylene-responsive transcription factor RAP2-4-like | ||||
Swissprot | Q9LM15 | 8e-39 | RA213_ARATH; Ethylene-responsive transcription factor RAP2-13 | ||||
TrEMBL | H9MAQ4 | 3e-84 | H9MAQ4_PINLA; Uncharacterized protein (Fragment) | ||||
STRING | ERM94200 | 1e-42 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22190.1 | 2e-28 | ERF family protein |
Publications ? help Back to Top | |||
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