PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi004930
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 189aa    MW: 21221.6 Da    PI: 4.682
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50072154PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-11996PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.21.5e-162372255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               ++kG+r +k +g+Wv+eIr p++   r +++lg+++t+e+Aa+a++ a  +l+g
  Psi004930 23 QFKGIRMRK-WGKWVSEIRMPNS---RDKIWLGSYDTPEKAARAYDFAVYCLRG 72
               69*****99.**********933...59********************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-282281IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-192380IPR016177DNA-binding domain
PROSITE profilePS5103220.9562380IPR001471AP2/ERF domain
CDDcd000189.55E-272381No hitNo description
SMARTSM003801.0E-302386IPR001471AP2/ERF domain
PfamPF008471.2E-92472IPR001471AP2/ERF domain
PRINTSPR003673.2E-82435IPR001471AP2/ERF domain
PRINTSPR003673.2E-84662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MAKPSSDQKG HSKPQKCSLK SRQFKGIRMR KWGKWVSEIR MPNSRDKIWL GSYDTPEKAA  60
RAYDFAVYCL RGSKAKFNFP EFLPEIPCAS SLSPPQIQAA ASKFAAEEFQ LPSEDDSNSS  120
SSSSWSEAET GIEGQRISVE QGPANWDSIL EDLDNCNSLT LEDFPPIDVP MEDYGIIFQH  180
TEDWGQGVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1423811473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.144260.0shoot
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314662.11e-41ethylene-responsive transcription factor ERF017-like
SwissprotQ9C5914e-38ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLB8LPP61e-137B8LPP6_PICSI; Uncharacterized protein
STRINGXP_010261769.12e-39(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.12e-39ERF family protein