PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi004822

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

bZIP

Protein Properties

Length: 195aa MW: 21613.5 Da PI: 9.184

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S38861867	PU_ref	Unigene	View CDS
PUT-183a-Picea_sitchensis-18390	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.2	3.5e-13	116	170	1	55
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +ke kr +r+ +NR++A+ R+RKka++ eLe+k+ eL+++N++L +++++l++e Psi004822 116 DKEHKRLKRLLRNRVSAQQARERKKAYLNELETKANELQQKNSELEERVSTLQNE 170 5899***********************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-15	116	180	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.3E-11	117	176	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	12.725	118	181	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.69E-13	120	178	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.6E-16	120	180	No hit	No description
CDD	cd14704	7.54E-19	121	171	No hit	No description
PROSITE pattern	PS00036	0	123	138	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
XGCKGRSDYL NLVRGFSLRS ASDGTTISEN XKMQATAPDF SGSVTGDKLI TSSSGDPHEE 60 AMNECVNESD DDIRRVPEMG VQTGFVVHSD LAVKTESERA SASGGSQRRR GRTPADKEHK 120 RLKRLLRNRV SAQQARERKK AYLNELETKA NELQQKNSEL EERVSTLQNE NFMLRQVLKN 180 MTAKNKGGGF VEAEG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269\|PubMed:15178762}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021758181.1	3e-48	transcription factor HY5-like
Swissprot	Q9SM50	1e-43	HY5_SOLLC; Transcription factor HY5
TrEMBL	A9NZF5	1e-114	A9NZF5_PICSI; Uncharacterized protein
STRING	XP_010670652.1	2e-46	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11260.1	5e-35	bZIP family protein

Publications ? help Back to Top
Wang F, et al. Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato. Plant Physiol., 2018. 176(2): p. 1311-1326 [PMID:29146776] Liu CC, et al. The bZip transcription factor HY5 mediates CRY1a-induced anthocyanin biosynthesis in tomato. Plant Cell Environ., 2018. 41(8): p. 1762-1775 [PMID:29566255]