PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Psi004627 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||||||
Protein Properties | Length: 204aa MW: 22557.4 Da PI: 10.2523 | ||||||||||||
Description | ERF family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57 | 4.9e-18 | 12 | 60 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykG+r+++ rg+W+AeIrdp++ ++lg+f+tae+Aa+a++a ++k++g Psi004627 12 YKGIRQRP-RGKWAAEIRDPRK---GVMVWLGTFDTAEKAARAYDAEARKIRG 60 9*******.8*********943...3*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.601 | 11 | 68 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.3E-34 | 11 | 74 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-20 | 11 | 69 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.82E-30 | 11 | 70 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.4E-29 | 11 | 69 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.9E-11 | 12 | 60 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.6E-9 | 12 | 23 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.6E-9 | 34 | 50 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
XTARGRKRKN IYKGIRQRPR GKWAAEIRDP RKGVMVWLGT FDTAEKAARA YDAEARKIRG 60 KKAKVNFADD LPPPKKNKVV KKPEDKMTEG SPIKTCTHLP QCSARSDIVQ GQKSNRLATA 120 KSALSTTIEG DGADFMDVPT LLIMGISEGS HQDGNSLLDC KAIKPNQSNS SEESVMDSYI 180 GLLRFLYLED RTDQSTGRVD INGT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-17 | 12 | 67 | 15 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | I0B4A0 | 4e-33 | I0B4A0_DIOKA; Ethylene response factor 3 (Fragment) | ||||
STRING | GSMUA_Achr9P18090_001 | 2e-33 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 1e-23 | ethylene-responsive element binding protein |