PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||||||
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TF ID | Psi004623 | ||||||||||||||||
Organism | |||||||||||||||||
Taxonomic ID | |||||||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | SBP | ||||||||||||||||
Protein Properties | Length: 205aa MW: 23245 Da PI: 9.1395 | ||||||||||||||||
Description | SBP family protein | ||||||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 133.9 | 5.4e-42 | 82 | 158 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqve+C+adl++akey+rrh+vCe+hska vvlv gl+qrfCqqCsrfh l+efDe+krsCrrrLa+hnerrrk+ Psi004623 82 ACQVEKCAADLADAKEYYRRHRVCEQHSKARVVLVLGLQQRFCQQCSRFHVLEEFDEAKRSCRRRLAGHNERRRKTP 158 5*************************************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 5.2E-35 | 75 | 144 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.009 | 80 | 157 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.24E-39 | 81 | 160 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 6.4E-32 | 83 | 156 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
XAPPSPSMKN PELPVEMDEV EVKVDIQSTN ASADEPRTAK RQGFELARIP EDPASKPTAL 60 SSPKKPKAAS SSSSSPRAQP PACQVEKCAA DLADAKEYYR RHRVCEQHSK ARVVLVLGLQ 120 QRFCQQCSRF HVLEEFDEAK RSCRRRLAGH NERRRKTPSD SSVDRLDSNH HLNDNWLRHM 180 TESDKMTMVL ERNTTAKVCK EIKNH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-35 | 69 | 156 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Psi.6262 | 0.0 | shoot |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009398957.2 | 3e-43 | PREDICTED: squamosa promoter-binding protein 1-like | ||||
Swissprot | Q38741 | 1e-39 | SBP1_ANTMA; Squamosa promoter-binding protein 1 | ||||
TrEMBL | A9NSA8 | 1e-144 | A9NSA8_PICSI; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P23650_001 | 1e-42 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53160.2 | 2e-39 | squamosa promoter binding protein-like 4 |
Publications ? help Back to Top | |||
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