PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Psi004591 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||||||
Protein Properties | Length: 206aa MW: 22652.5 Da PI: 9.2473 | ||||||||||||
Description | ERF family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.9 | 1.4e-19 | 101 | 153 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s+y+GVr+++ +g+++AeIrdp + k +r++lg+f taeeAa a+++a+ +++g+ Psi004591 101 SHYRGVRRRP-WGKFAAEIRDPAK--KGARVWLGTFNTAEEAAHAYDRAAFRIRGA 153 79********.**********954..34*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.7E-14 | 101 | 152 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-23 | 101 | 161 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.15E-31 | 101 | 160 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.8E-32 | 102 | 160 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.829 | 102 | 160 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.8E-36 | 102 | 166 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-11 | 103 | 114 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-11 | 126 | 142 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MDVAGGVSNN INMKMLNMLE LIRHHLLDVE DEIDIIDLQR GNQVLASGSR LTSHGNKFAE 60 AQDYSSSSSV CTVIRREEAF NVKPQAHDED NGENKQISRA SHYRGVRRRP WGKFAAEIRD 120 PAKKGARVWL GTFNTAEEAA HAYDRAAFRI RGARALVNFP LAFASNSENG SAVSHMGQKR 180 KRGNGGGGTL DLGACGWIME KLICLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-32 | 98 | 161 | 1 | 64 | ATERF1 |
3gcc_A | 2e-32 | 98 | 161 | 1 | 64 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9NMA3 | 1e-148 | A9NMA3_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47220.1 | 2e-26 | ethylene responsive element binding factor 2 |