PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Psi004559 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | LFY | ||||||||||||
Protein Properties | Length: 208aa MW: 23761.2 Da PI: 6.0469 | ||||||||||||
Description | LFY family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 167.4 | 1.3e-51 | 31 | 193 | 1 | 152 |
FLO_LFY 1 mdpeafsaslfkwdpraaa..aapparlleeaavseapleaaaaaaark.lreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseif 97 md+e+f++ +f+wd+r+a aap+a+ + ++ + +ple ++ rk l++le+lf++yGvry+t+ak++e+Gft++tLv+m++ee++dlmk+l+ei+ Psi004559 31 MDAEHFPVGFFRWDQRPAPaaAAPAATTTVFNKDHGRPLEIILPMNGRKeLKSLEDLFREYGVRYSTLAKMTEMGFTANTLVNMTEEEIEDLMKTLVEIY 130 9*************777662233333333333445677888999998888************************************************** PP FLO_LFY 98 rldllvGeryGikaavraerrrlee..........eeaekkrrkllsedeetaldalsqeglsee 152 ++dll+GeryGik+a+rae++rl++ +e ++r+++l++d++t a+++eg + Psi004559 131 HMDLLIGERYGIKSAIRAEKKRLQDclemqrleilSE--AERKRILHDDQNTFAAAMTSEGYKSS 193 *****************************99987544..555557999999999******96554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 3.1E-38 | 31 | 174 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
PLNAKSLDGR EIPGPRGVLE ERTAFYLEKN MDAEHFPVGF FRWDQRPAPA AAAPAATTTV 60 FNKDHGRPLE IILPMNGRKE LKSLEDLFRE YGVRYSTLAK MTEMGFTANT LVNMTEEEIE 120 DLMKTLVEIY HMDLLIGERY GIKSAIRAEK KRLQDCLEMQ RLEILSEAER KRILHDDQNT 180 FAAAMTSEGY KSSVSSCQAQ WCCLHKQT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ude_A | 2e-38 | 77 | 172 | 4 | 98 | GINLFY PROTEIN |
4ude_B | 2e-38 | 77 | 172 | 4 | 98 | GINLFY PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Psi.14135 | 0.0 | shoot |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in both male and female cones, vegetative buds and needles, but not in the roots. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002966714.2 | 2e-29 | floricaula/leafy-like protein FL1 | ||||
Swissprot | O04407 | 5e-93 | NEED_PINRA; Floricaula/leafy-like protein FL1 | ||||
TrEMBL | A9P2C1 | 1e-133 | A9P2C1_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61850.1 | 1e-19 | floral meristem identity control protein LEAFY (LFY) |