PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Psi004499 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||||||
Protein Properties | Length: 211aa MW: 23651.2 Da PI: 8.067 | ||||||||||||
Description | ERF family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55 | 2.1e-17 | 48 | 97 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr++ +g+WvAeIr + r++lg++ tae+Aa+a++aa +l+g Psi004499 48 RFRGVRRRT-WGKWVAEIRMlR-----CrSRVWLGSYRTAEQAARAYDAASFCLRG 97 69****877.**********76.....56*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.1E-12 | 48 | 97 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-28 | 48 | 107 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.3E-20 | 48 | 106 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.957 | 48 | 105 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-33 | 48 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-10 | 49 | 60 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.40E-22 | 56 | 107 | No hit | No description |
PRINTS | PR00367 | 8.0E-10 | 71 | 87 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
XGDHRNIRSL SQYLYSCSGY LAMKKEVDQA IMVSRSREAE AEELRSRRFR GVRRRTWGKW 60 VAEIRMLRCR SRVWLGSYRT AEQAARAYDA ASFCLRGPAA FLNFPESPPA EFLPYPLRPL 120 HDIHLSPQQI RTIAANYATM TPSSTSISTS TLGLPPQQSN LMDNSALEEA GGEGSASVTT 180 HVDSTKSAPR NMIFPNLNDT LDEDSEDSSE R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-18 | 48 | 105 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Psi.12490 | 0.0 | shoot |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | D5A8A7 | 1e-137 | D5A8A7_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G21960.1 | 1e-23 | ERF family protein |