PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF ID | Psi003642 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||||||
Family | bZIP | ||||||||||||
Protein Properties | Length: 254aa MW: 27925 Da PI: 6.6665 | ||||||||||||
Description | bZIP family protein | ||||||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 36.3 | 1.2e-11 | 42 | 88 | 4 | 50 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 +k +r NReA r++R++Kka ++ Lee+v +L a N+ L+k+l+ Psi003642 42 SKSKKRTSGNREAVRKYREKKKAHTAYLEEEVSQLRALNQHLIKRLQ 88 688899999**********************************9997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.7E-9 | 38 | 106 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.6E-12 | 39 | 106 | No hit | No description |
PROSITE profile | PS50217 | 8.956 | 41 | 88 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 3.9E-13 | 42 | 89 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.69E-7 | 43 | 90 | No hit | No description |
CDD | cd14686 | 2.40E-10 | 51 | 97 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 254 aa Download sequence Send to blast |
XNLPGPDSTH THTCFHTHTK LLADIEEEKS VDNSETHQNG SSKSKKRTSG NREAVRKYRE 60 KKKAHTAYLE EEVSQLRALN QHLIKRLQAQ AGLEAEVVRL RCLLADFRRR IDGELGAYPY 120 QKPVGTDEQD GTLQLLPGGY VLNSFHVPCD ADVPCLHPSI TPQRNGGMLS EDGSTTKWQE 180 GCNLVAGNCQ ALKVNEAGSR GVVVCPEDTM ANVVPAAVPS ENLISHCSMT NDKSIGMRFG 240 GNATFEDLEN IRNN |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporters ZIP3, ZIP4, ZIP5 and ZIP9 during growth in zinc-deficient conditions. ZIP9 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Swissprot | Q8VY76 | 6e-52 | BZP19_ARATH; Basic leucine zipper 19 | ||||
TrEMBL | A0A0C9RIR7 | 1e-61 | A0A0C9RIR7_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_15553_1906 transcribed RNA sequence |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35040.1 | 8e-43 | bZIP family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|