PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi003472
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 266aa    MW: 30907.4 Da    PI: 7.7266
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41647699PU_refUnigeneView CDS
PUT-183a-Picea_sitchensis-865PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.43.4e-057199331
               HHHHHHHHHHHHHHHHHHHHHHCTSCCC. CS
        HLH  3 rahnerErrRRdriNsafeeLrellPkas 31
               ++   +E+ RR+r++s   +L +llP  +
  Psi003472 71 ESQTLAEQLRRKRMKSLCTQLESLLPATP 99
               667889********************953 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-764100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.5568156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-86997IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-8136170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-7138168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MASDCLFSYS FPASRTVYSN VAQCDRQVDC RVTSSRKRPS EVDLADSQDY NDLQEKVWRD  60
VDRMMEFSSK ESQTLAEQLR RKRMKSLCTQ LESLLPATPA KVITTLARAD TVFQGFILYV  120
QKSDGKFAKI IFCFLIFIQL DRCGLFEETI NYIRKLEENI HRLKRKRENL LAIQSGKTAN  180
ENTEIKVAVE FYGREAIISI TGQRGPRQMW KILEELESHG LDVETSQLFT GEFFVLVFFH  240
VNFRDYISQD PAQIQTSLEC RLKLTY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.40850.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NYK81e-161A9NYK8_PICSI; Uncharacterized protein