PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi003276
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ARR-B
Protein Properties Length: 280aa    MW: 31575.9 Da    PI: 6.7907
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S26040737PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-1554PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like93.32e-29222275155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  Psi003276 222 KPRVVWSVELHQQFVNAVNQL-GIDKAVPKRILELMHVQGLTRENVASHLQKYRL 275
                79*******************.********************************8 PP
2Response_reg80.55.7e-27371451109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+p+ +++l ++l++  y +v+++  +++al +l+ek+  +Dl++ D+ mp+mdG++ll++   e  +lp+i+++a g  +++ + +k Ga 
     Psi003276  37 VLVVDDDPTCLKILDKMLRRCLY-QVTTCCRATAALSMLREKKgaFDLVISDVYMPDMDGFKLLEHVGLEM-DLPVIMMSADGGTSTVMKGIKHGAC 131
                   89*********************.***************999999**********************6644.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+  eel +
     Psi003276 132 DYLIKPVRLEELKN 145
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.0E-15113280IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23002.0E-4434186No hitNo description
SuperFamilySSF521725.55E-3734158IPR011006CheY-like superfamily
SMARTSM004488.3E-3235147IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.77336151IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.6E-2437145IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.32E-2838151No hitNo description
PROSITE profilePS5129411.511219278IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-30219279IPR009057Homeodomain-like
SuperFamilySSF466891.88E-20220279IPR009057Homeodomain-like
TIGRFAMsTIGR015577.4E-26222275IPR006447Myb domain, plants
PfamPF002498.8E-8224274IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MVMMPAHDSV TSSMSMSTGN SYGGGKADHQ FPAGLRVLVV DDDPTCLKIL DKMLRRCLYQ  60
VTTCCRATAA LSMLREKKGA FDLVISDVYM PDMDGFKLLE HVGLEMDLPV IMMSADGGTS  120
TVMKGIKHGA CDYLIKPVRL EELKNIWQHV IRKKRNEPKD FDPSGSFEDN DRHRKGSDDV  180
DYASSVNEGT DGNWKLLKKR KEAKEEEDDG EEDNDDPSAS KKPRVVWSVE LHQQFVNAVN  240
QLGIDKAVPK RILELMHVQG LTRENVASHL QKYRLYLKKX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A3e-22222278157Transcription factor LUX
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194200KLLKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.44190.0shoot
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006849799.11e-155two-component response regulator ORR21 isoform X1
RefseqXP_011625385.11e-155two-component response regulator ORR21 isoform X2
SwissprotA2XE311e-118ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-118ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A0D6R4K91e-160A0A0D6R4K9_ARACU; Uncharacterized protein
STRINGERN113801e-155(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.11e-107response regulator 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]