PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi003175
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NF-YA
Protein Properties Length: 286aa    MW: 30775.1 Da    PI: 9.4351
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41649621PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-7061PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.48.4e-32106161258
  CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 p+YVNaKQy++Il+RRq+Rak+e+e+kl +ksrkpylheSRh+hAlrR+Rg+gGrF
  Psi003175 106 PPVYVNAKQYRGILRRRQSRAKAESENKL-IKSRKPYLHESRHRHALRRARGCGGRF 161
                59***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.0E-36103164IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.536104164IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.7E-23107129IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.4E-27107161IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860109129IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.7E-23138161IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MQSVTTKLGS ESSPIDEQQK QPIQQQQVPS TGILPAHAES VMRQAQLELG PAGNAFWQAQ  60
AAYPYPEPFY GSYVATYGAQ AMIPPHMLGV QQPGLPLPPS DMVEEPPVYV NAKQYRGILR  120
RRQSRAKAES ENKLIKSRKP YLHESRHRHA LRRARGCGGR FLNTKNDGSN EKDVSGDNDS  180
HDSMGQSNKV LNPDSGKDGT SHEVNGIQRI GNLAQIGNGI SAPHSGTVSP GQVGVGESVS  240
NGLHYTYHQR RGFHSSAFHP LSVSNAESGQ VGGMVSSGGH HTAVAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A9e-20105169266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145154RHRHALRRAR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.47590.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388758.11e-67nuclear transcription factor Y subunit A-7-like isoform X1
TrEMBLA9NU260.0A9NU26_PICSI; Uncharacterized protein
STRINGPP1S31_299V6.14e-67(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.12e-37nuclear factor Y, subunit A7