PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi003009

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

MYB_related

Protein Properties

Length: 298aa MW: 32474.1 Da PI: 10.0258

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S50071595	PU_unref	Unigene	View CDS
PUT-183a-Picea_sitchensis-11817	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.4	5.1e-11	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT eE+ l +v+++G+g W++I r R+ ++k++w++ Psi003009 5 KQKWTHEEEAALRTGVEKYGPGKWRAILRDPSlslclASRSNVDLKDKWRN 55 79*********************************9**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.308	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.17E-16	2	78	IPR009057	Homeodomain-like
SMART	SM00717	2.7E-7	4	59	IPR001005	SANT/Myb domain
Pfam	PF00249	2.6E-8	5	55	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.7E-14	5	56	IPR009057	Homeodomain-like
CDD	cd11660	2.61E-19	6	56	No hit	No description
SMART	SM00526	9.1E-15	119	184	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46785	2.61E-14	119	203	IPR011991	Winged helix-turn-helix DNA-binding domain
PROSITE profile	PS51504	23.292	121	195	IPR005818	Linker histone H1/H5, domain H15
Gene3D	G3DSA:1.10.10.10	1.5E-16	121	204	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00538	1.6E-9	126	192	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MGAPKQKWTH EEEAALRTGV EKYGPGKWRA ILRDPSLSLC LASRSNVDLK DKWRNMSVTA 60 NGWGSREKAR LALKRSKYIA KQSGRQLALS ALSNGNMDVV VVTKPLTTVN PYLPSSNTKR 120 SISRLDKLIL DAVSTLKEPN GSNKSAIATY IEENQYPPPN FRRMLSSKLK SLVICGKLVK 180 IRQNYMISGS FRPDDDKAPK SEKEEKHVRT LSKNSSKKVV EEVGITVKSE VDAEVSKMRT 240 MNAEEAAKAA AVAVAEAEAA IAAAEQAAHE AAVAEADAEA KEAFAEAAEM ALVNSRSC

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Psi.22117	0.0	needle\| shoot

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000269\|PubMed:19102728}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011623052.1	6e-87	telomere repeat-binding factor 1 isoform X1
Refseq	XP_011623053.1	3e-87	telomere repeat-binding factor 1 isoform X2
Refseq	XP_011623054.1	3e-87	telomere repeat-binding factor 1 isoform X2
Swissprot	Q8VWK4	4e-72	TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBL	B8LR63	0.0	B8LR63_PICSI; Uncharacterized protein
STRING	ERN05352	4e-86	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	3e-73	telomere repeat binding factor 1

Publications ? help Back to Top
Alexandrov NN, et al. Features of Arabidopsis genes and genome discovered using full-length cDNAs. Plant Mol. Biol., 2006. 60(1): p. 69-85 [PMID:16463100] Schrumpfová PP, et al. Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase. Plant J., 2014. 77(5): p. 770-81 [PMID:24397874] Liang SC, et al. Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2. PLoS Genet., 2015. 11(12): p. e1005660 [PMID:26642436] Fulcher N,Riha K Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana. Front Genet, 2015. 6: p. 349 [PMID:26779251] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]