PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi002822
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HB-other
Protein Properties Length: 312aa    MW: 35639.5 Da    PI: 5.5816
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41646630PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-17530PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox291.8e-09251302455
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
   Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                + +++k q+ +Le++++++r p+ ++   + + ++L+ + +  WF  +R++e
  Psi002822 251 KKRMKKVQIATLEKVYRRTRRPTDAMVDNIIHLTNLPRKAIVKWFSDKRMQE 302
                445899*******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.815245305IPR001356Homeobox domain
SMARTSM003894.3E-4249309IPR001356Homeobox domain
SuperFamilySSF466891.15E-9249302IPR009057Homeodomain-like
CDDcd000868.70E-7250302No hitNo description
PfamPF000464.7E-7251302IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-8252303IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MAMALSSSPP PPPLAMVSPG RLSLSHAHSL QSVQWRGRYC PCSLQARYLT QFQVAASRSN  60
RPLSSSKTKK AHKNEEDEDP LDEDALEALF IQLEKDLEKD QLSDDDENDM ITDEEISKFE  120
EELKEAISDI DDDEEALDEY PPLKLENWQL QKLAAALEVG RRKVSVKILT EELGLDREIV  180
LDLLRNPPPE LLLIQPVKDN TGSIQSAIKP DNDNVGSSGS DRKLVDPTSK EASKNEAEVP  240
IFFNQVQWNR KKRMKKVQIA TLEKVYRRTR RPTDAMVDNI IHLTNLPRKA IVKWFSDKRM  300
QESPKVVYKK RR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.148520.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9P2C90.0A9P2C9_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11270.17e-40overexpressor of cationic peroxidase 3