PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi002816
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Trihelix
Protein Properties Length: 313aa    MW: 34230.9 Da    PI: 9.2168
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S42984616PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-12484PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix36.51.3e-1130117286
   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                W  + v +L+e + ++  +++ g lk ++W+++ + +     ++    ++ kqC++k enl++ryk +k+++ +r   ss ++++f++l+
  Psi002816  30 WHPSTVSKLLESYGDKCATIK-GYLKIKDWDDIVRTVnahcdASNIAPKTMKQCRDKVENLKRRYKLEKRRAANR-GLSSVHWSFFHKLD 117
                99999********99998886.55999******9999998887888899************************98.788889******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-1428119No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGSVSEDEDE YGKGGAVVGG SASSVSRCEW HPSTVSKLLE SYGDKCATIK GYLKIKDWDD  60
IVRTVNAHCD ASNIAPKTMK QCRDKVENLK RRYKLEKRRA ANRGLSSVHW SFFHKLDEIM  120
AMATATATGS DKATSLLEAC QSSFELNQGV DCELPEGFAG ESMPPPPLMS MSMSMSDMVL  180
SVFAGADRGK GLVDNTGGVD CSLDDILNNV CSYSSKNNRR LDFQDSSSPE KQPPPKRKKS  240
SASNSPSVSK KRKGKSTNPI QSLADALVGF SEVYARIEIA KMEMFTKLVL ELAKLRTKRK  300
KRSHSPSIPS DPK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236252RKKSSASNSPSVSKKRK
2299303KKRSH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.25430.0shoot
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.13e-18Trihelix family protein