PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Psi002575 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | HD-ZIP | ||||||||||||
Protein Properties | Length: 332aa MW: 36865.6 Da PI: 7.6572 | ||||||||||||
Description | HD-ZIP family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.8 | 1.9e-18 | 191 | 245 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F++n+ ++ ++++ LAk+l+L rqV vWFqNrRa+ k Psi002575 191 RKKLRLSKEQSALLEESFKENSSLNPKQKQALAKRLNLRPRQVEVWFQNRRARTK 245 778899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 123.3 | 1.2e-39 | 191 | 280 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq++lLEesF+e++ L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+ke +eLr +l Psi002575 191 RKKLRLSKEQSALLEESFKENSSLNPKQKQALAKRLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTDENRRLQKELQELR-AL 280 69*************************************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 6.2E-9 | 34 | 141 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 4.1E-18 | 180 | 248 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.15E-18 | 185 | 248 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.491 | 187 | 247 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.9E-16 | 189 | 251 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.47E-18 | 191 | 248 | No hit | No description |
Pfam | PF00046 | 9.2E-16 | 191 | 245 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 222 | 245 | IPR017970 | Homeobox, conserved site |
CDD | cd14686 | 0.00982 | 240 | 279 | No hit | No description |
Pfam | PF02183 | 9.0E-11 | 247 | 281 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 4.5E-26 | 247 | 290 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
XSPYILPLPF LSSSSVNFSL QIYMLMKQMG MDMEDCNTGL GLGMSIGLGI GLLREDLHSH 60 RHHVNGPPVQ LDLLPLAPGL PSRDLPWGKT SPGTDGERSA GESKATVPRR IDVNKLPASC 120 YYNEDAGTIN VSSPNSALSS FHVDSGGAIN AESSCYAMSV KRERDATDEL EADRACSRVS 180 DEEADQEGGT RKKLRLSKEQ SALLEESFKE NSSLNPKQKQ ALAKRLNLRP RQVEVWFQNR 240 RARTKLKQTE VDCEFLKRCC ESLTDENRRL QKELQELRAL KLASPLYMQM PAATLTMCPS 300 CERVVPAENS RPPPFTLAKP QFYPYTHSSA AC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 189 | 195 | TRKKLRL |
2 | 239 | 247 | RRARTKLKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Psi.1705 | 0.0 | needle |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018857289.1 | 4e-91 | PREDICTED: homeobox-leucine zipper protein HAT22-like | ||||
TrEMBL | A9NKN4 | 0.0 | A9NKN4_PICSI; Uncharacterized protein | ||||
STRING | ERN11120 | 8e-89 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 1e-76 | HD-ZIP family protein |