PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi002505
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Trihelix
Protein Properties Length: 337aa    MW: 38469.7 Da    PI: 9.3043
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50073663PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-4612PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.92e-1663149181
   trihelix   1 rWtkqevlaLiearr......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                rWt + +l+L++a+       + + +++r+k++  +W+ +s+++++ g+ r+++qC+++w+ +  +ykki++ e++  ++++s + +
  Psi002505  63 RWTSSDTLVLVNAKLveknmhSAGGAIKRTKSAIEKWRTISAHCHDNGLDRNATQCRDRWKHILPDYKKIRHYERNIPPGHVSYWNM 149
                8*************9555333334444467899*******************************************99999988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.1E-656131IPR009057Homeodomain-like
PROSITE profilePS500906.99256126IPR017877Myb-like domain
PfamPF138376.5E-1161144No hitNo description
CDDcd122032.27E-1763133No hitNo description
SuperFamilySSF466895.47E-595128IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGPDDPNGVI HKDEISEQQP NHPMTTVAEV ICCLPSSQDP RDVTPHEVRG KRKLSSEHKG  60
RVRWTSSDTL VLVNAKLVEK NMHSAGGAIK RTKSAIEKWR TISAHCHDNG LDRNATQCRD  120
RWKHILPDYK KIRHYERNIP PGHVSYWNMT PKERMDKRLP TNYTKELYDA MNKHFGQKGN  180
DVGDMIIDTS ASDHGTFEDC LTPAKNVIMH ENSMPETPLQ SPGDTSSDRD KQYPGKKRKA  240
ASKSAGIKAT LSENNKMIIS NLKMAEEGRM KRHEKYCNLF ERRMEMDEKY LNHHAMNVQR  300
MINVEEQKVK AQRDLVSALN TIGQAMLKIC ESLDTKG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.76450.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LKP70.0B8LKP7_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.17e-20Trihelix family protein