PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi002457
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HD-ZIP
Protein Properties Length: 341aa    MW: 38586.3 Da    PI: 5.9589
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41650904PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-1807PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.4e-1973126356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k++++t eq+++Le+ Fe  ++++ e++ +LAk lgL +rq++vWFqNrRa++k
  Psi002457  73 KKRRLTIEQVKTLEKSFELRNKLDPERKMQLAKALGLHQRQISVWFQNRRARWK 126
                45689************************************************9 PP
2HD-ZIP_I/II111.84.6e-3672163192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekkrrl+ eqvk+LE+sFe ++kL+perK++la++Lgl++rq+ vWFqnrRAR+ktkq+Ek++++Lk++y++l+++ + L +++++ ++e++
    Psi002457  72 EKKRRLTIEQVKTLEKSFELRNKLDPERKMQLAKALGLHQRQISVWFQNRRARWKTKQMEKNFAVLKHEYETLRRNYDILFQKNRQFKDEVQ 163
                  69************************************************************************************999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.42E-2057130IPR009057Homeodomain-like
PROSITE profilePS5007117.08668128IPR001356Homeobox domain
SMARTSM003893.2E-1971132IPR001356Homeobox domain
CDDcd000862.85E-1773129No hitNo description
PfamPF000464.6E-1673126IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-1975132IPR009057Homeodomain-like
PRINTSPR000318.1E-699108IPR000047Helix-turn-helix motif
PROSITE patternPS000270103126IPR017970Homeobox, conserved site
PRINTSPR000318.1E-6108124IPR000047Helix-turn-helix motif
PfamPF021836.8E-8128168IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MITEYQSAKA MDDIIASCTS VGLQGAGSLT RNECENTRKR SMSSTSYSGA MNLSEHDIGE  60
EDGSDDCPHF GEKKRRLTIE QVKTLEKSFE LRNKLDPERK MQLAKALGLH QRQISVWFQN  120
RRARWKTKQM EKNFAVLKHE YETLRRNYDI LFQKNRQFKD EVQWLSRELK DNDRSSKVSI  180
SEIESQKKPA NSVPKITDSP MELSVKSEIC INFTEQPKHN YPTTTNEQDG GCCSYMTESA  240
SSIFNMDSPR TIESPQSPGI PQMASASANR SSPVLVVEGS SVGGEVAASV QKTPPPGLHE  300
WHCLPKVEVD QSTEESWCNL LYSLEEQGAL MLCEYWRVPD G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120128RRARWKTKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NQH80.0A9NQH8_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.15e-41HD-ZIP family protein