PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi002392

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

Trihelix

Protein Properties

Length: 348aa MW: 39440.4 Da PI: 7.4367

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S41650810	PU_unref	Unigene	View CDS
PUT-183a-Picea_sitchensis-30942	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	84.5	1.4e-26	46	128	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li++rre++ ++++k++k+lWe++s kmrergf rsp++C++kw+nl k+ykk k++ ++ + s +++ +++le Psi002392 46 WGHDEIRSLIALRREIDGLFNTSKSNKHLWEKISLKMRERGFDRSPTMCTDKWRNLLKEYKKAKHHHDSH--DGSAKMSCYKDLE 128 ********************************************************************97..6667899999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.7	38	102	IPR017877	Myb-like domain
SMART	SM00717	0.0054	42	104	IPR001005	SANT/Myb domain
Pfam	PF13837	8.7E-19	45	130	No hit	No description
CDD	cd12203	1.56E-29	46	109	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MEVVTNGMQL QAQVQQQHHH HMLLSSDVNG EDHEIKTTPK KRAEVWGHDE IRSLIALRRE 60 IDGLFNTSKS NKHLWEKISL KMRERGFDRS PTMCTDKWRN LLKEYKKAKH HHDSHDGSAK 120 MSCYKDLEEL LRERAKVAPY RSPNKVAALD SYPHFSPKGT GRSPFNLERR LDHDGLPLAL 180 PLSDATAANG TPPWNWRDAT GNGGENHTSY NGKVILVKWG DITRRIGIDG TAEAISGAIR 240 PAFGLRTKRA FWLQDEDGVV HSLDRNMPLG TYILCLDEGL TIKVCNYDES DSLTGTADEK 300 TFYTEEDFRY FLTQRGWSGL QEVGGFRTVD SLNELCPMCV YQRAGSLG

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MEVVTNGMQL QAQVQQQHHH HMLLSSDVNG EDHEIKTTPK KRAEVWGHDE IRSLIALRRE  60
IDGLFNTSKS NKHLWEKISL KMRERGFDRS PTMCTDKWRN LLKEYKKAKH HHDSHDGSAK  120
MSCYKDLEEL LRERAKVAPY RSPNKVAALD SYPHFSPKGT GRSPFNLERR LDHDGLPLAL  180
PLSDATAANG TPPWNWRDAT GNGGENHTSY NGKVILVKWG DITRRIGIDG TAEAISGAIR  240
PAFGLRTKRA FWLQDEDGVV HSLDRNMPLG TYILCLDEGL TIKVCNYDES DSLTGTADEK  300
TFYTEEDFRY FLTQRGWSGL QEVGGFRTVD SLNELCPMCV YQRAGSLG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	8e-41	40	126	1	86	DNA binding protein GT-1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Psi.14970	0.0	shoot

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010248872.1	1e-159	PREDICTED: trihelix transcription factor GT-1-like
Swissprot	Q9FX53	1e-136	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A9NQR4	0.0	A9NQR4_PICSI; Uncharacterized protein
STRING	XP_010248872.1	1e-158	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-138	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]