PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi002276

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

WOX

Protein Properties

Length: 358aa MW: 39855.1 Da PI: 6.3429

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S41648576	PU_unref	Unigene	View CDS
PUT-183a-Picea_sitchensis-349	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.2	4.4e-21	77	137	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t++++ql++Le+lFe+ + +ps+++++e++++l +++e++V++WFqNr+a+ k+ Psi002276 77 RQRWTPSQTQLQILENLFEQgHATPSKQKIKEITMELsqhgQISETNVYNWFQNRKARAKR 137 89***************99************************************97 PP
2	Wus_type_Homeobox	99.7	2.2e-32	76	139	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtP+++Q++iLe+l+++G tP+k++i++it+eL+++G+i+++NV++WFQNrkaR ++kq Psi002276 76 ARQRWTPSQTQLQILENLFEQGHATPSKQKIKEITMELSQHGQISETNVYNWFQNRKARAKRKQ 139 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.0E-16	72	139	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.2E-16	72	139	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.852	73	138	IPR001356	Homeobox domain
SMART	SM00389	3.2E-13	75	142	IPR001356	Homeobox domain
Pfam	PF00046	1.0E-18	77	137	IPR001356	Homeobox domain
CDD	cd00086	3.48E-13	77	139	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MANPNFVALH NNQVMTDEQM ETLRRQICVY STICSQLVEM HRAMSQQQPS SVPTLLMGQH 60 MLYDLAQGNP GFRASARQRW TPSQTQLQIL ENLFEQGHAT PSKQKIKEIT MELSQHGQIS 120 ETNVYNWFQN RKARAKRKQL PSQRGGESEN ETDDEYPGEK RFKPQRDSNA QNPKSGHSEA 180 DPQAPNKSDD VVQHRPCTTD QKQFGIQDND TPSLLPREDE MRPHASFGST MIGVSGSAEH 240 ESVECLPEVK PIYSSVEVGN RDHDATQAYT HGSGTTTGQA DGKPWQVPNV VVDVRRMFGE 300 NAVLVDSRGH MVPTNDMGVS FHPLHASEGY TVLSQYQCAS GVPVHALRAN TSDPYGGT

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MANPNFVALH NNQVMTDEQM ETLRRQICVY STICSQLVEM HRAMSQQQPS SVPTLLMGQH  60
MLYDLAQGNP GFRASARQRW TPSQTQLQIL ENLFEQGHAT PSKQKIKEIT MELSQHGQIS  120
ETNVYNWFQN RKARAKRKQL PSQRGGESEN ETDDEYPGEK RFKPQRDSNA QNPKSGHSEA  180
DPQAPNKSDD VVQHRPCTTD QKQFGIQDND TPSLLPREDE MRPHASFGST MIGVSGSAEH  240
ESVECLPEVK PIYSSVEVGN RDHDATQAYT HGSGTTTGQA DGKPWQVPNV VVDVRRMFGE  300
NAVLVDSRGH MVPTNDMGVS FHPLHASEGY TVLSQYQCAS GVPVHALRAN TSDPYGGT

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Psi.6284	0.0	needle\| shoot

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A9NWZ9	0.0	A9NWZ9_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	6e-47	WUSCHEL related homeobox 13