PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi002170

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

G2-like

Protein Properties

Length: 366aa MW: 40651.7 Da PI: 7.5001

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S37603394	PU_unref	Unigene	View CDS
PUT-183a-Picea_sitchensis-2269	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.8	1e-32	2	56	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt+eLHerFveav++LGG++kAtPk+++ m+v+gLtl+h+kSHLQkYRl Psi002170 2 KPRLRWTSELHERFVEAVTKLGGPDKATPKAVRTRMGVEGLTLYHLKSHLQKYRL 56 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.61	1	59	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-29	1	57	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.6E-25	2	57	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.4E-15	2	57	IPR009057	Homeodomain-like
Pfam	PF00249	4.5E-9	4	55	IPR001005	SANT/Myb domain
Pfam	PF14379	9.2E-27	112	158	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
PKPRLRWTSE LHERFVEAVT KLGGPDKATP KAVRTRMGVE GLTLYHLKSH LQKYRLGKQP 60 HKEVNVDTSR DGLSHGGPVA GYGSTACRVS EVQVACNSVP SIIPANMTDT LQITEALRMQ 120 MEVQRRLHEQ LEVQRHLQLR IEAQGKYLQS ILEKARETLA GYNVGSIGLE ATRAELSELA 180 SKVKSECFNS TFSALTFSTM PEIPGVLPES QIARQQSQVA DCSAYSCLTS NESSEKSPTE 240 NLQAGGRKRP RSAYDNKVQF WQDDIREDMS LQELTGEENL SSPSSRIKDS SIVFHERGTS 300 DIVQAEENGN RLSGQKGKEC EMNGVLVDPP ITRTLAFCSA LSMQENSQMY EATKVYTNQD 360 KTRSKG

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

PKPRLRWTSE LHERFVEAVT KLGGPDKATP KAVRTRMGVE GLTLYHLKSH LQKYRLGKQP  60
HKEVNVDTSR DGLSHGGPVA GYGSTACRVS EVQVACNSVP SIIPANMTDT LQITEALRMQ  120
MEVQRRLHEQ LEVQRHLQLR IEAQGKYLQS ILEKARETLA GYNVGSIGLE ATRAELSELA  180
SKVKSECFNS TFSALTFSTM PEIPGVLPES QIARQQSQVA DCSAYSCLTS NESSEKSPTE  240
NLQAGGRKRP RSAYDNKVQF WQDDIREDMS LQELTGEENL SSPSSRIKDS SIVFHERGTS  300
DIVQAEENGN RLSGQKGKEC EMNGVLVDPP ITRTLAFCSA LSMQENSQMY EATKVYTNQD  360
KTRSKG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-19	2	55	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-19	2	55	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-19	2	55	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-19	2	55	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010264109.1	2e-83	PREDICTED: protein PHR1-LIKE 3-like isoform X1
Swissprot	Q8LAJ7	4e-67	PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBL	C0PPV3	1e-99	C0PPV3_PICSI; Uncharacterized protein
STRING	XP_010264109.1	8e-83	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	2e-69	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]