PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi002070
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HB-other
Protein Properties Length: 375aa    MW: 41732.8 Da    PI: 6.6049
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50072633PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-29737PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.34.6e-071375656
               S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
   Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
               +f++++++e+e++ e      p++++++ LA+k            ++ +qV +WFqN+R+ +k
  Psi002070 13 RFSSKEVQEMEKVLEDtkGAIPNRDMIRSLAEKFsasperdgkiLVQIKQVWTWFQNKRYSQK 75
               6999999******99633678*********************999999************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003897.5E-4781IPR001356Homeobox domain
SuperFamilySSF466895.13E-91278IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-71382IPR009057Homeodomain-like
CDDcd000861.03E-41378No hitNo description
PROSITE profilePS500719.5721377IPR001356Homeobox domain
PfamPF000462.0E-41375IPR001356Homeobox domain
PfamPF167199.6E-42116245IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MGRPPLSGAP VFRFSSKEVQ EMEKVLEDTK GAIPNRDMIR SLAEKFSASP ERDGKILVQI  60
KQVWTWFQNK RYSQKTKSTK VQGNAAPSPR DDSVAKRAVT SSAAVPSGRK VPDGAEMEFE  120
AKSSRDGAWY DVASFVTHRM FESGDPEVRV RFAGFGAEED EWVNVRKCVR QRSLPCESSE  180
CVAVLPGDLI LCFQEGKEQA LYFDAHILDA QRRRHDVRGC RCRFLVRYDN DQSELQEIVP  240
LRKICRRPET DYRLKLVHAS KELSSIELDQ GSQQVKDAHA APMSHFGEGT REEFHLSADI  300
SRSISQVLES NVQSLTAPTT SSVLHAKEAS SAESQTSLPA TEIDSIQNMV APSITHTDNA  360
SNITVDATAK STVQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A4e-471152492134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B4e-471152492134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A4e-471152492134SHH1 SAWADEE
4iur_B4e-471152492134SHH1 SAWADEE
4iut_A4e-471152492134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B4e-471152492134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A4e-471152492134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B4e-471152492134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A4e-471152492134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B4e-471152492134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.141030.0shoot
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010275167.11e-146PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
RefseqXP_010275168.11e-146PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
SwissprotQ8RWJ71e-117SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLB8LNE30.0B8LNE3_PICSI; Uncharacterized protein
STRINGXP_010275166.11e-145(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.21e-107sequence-specific DNA binding transcription factors;sequence-specific DNA binding