PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi001986
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 386aa    MW: 43428.9 Da    PI: 9.8432
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41647174PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-20436PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.3e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv +++++G g+W++ +++ g+ R++k+c++rw +yl
        Psi001986 14 KGPWTPEEDQKLVAYIQEHGHGSWRALPQKAGLLRCGKSCRLRWANYL 61
                     79******************************99************97 PP
2Myb_DNA-binding55.71.1e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++++E++ +++++++lG++ W+tIa +++ +Rt++++k++w+++l
        Psi001986  67 RGKFSAQEEQTIIQLHALLGNR-WSTIATHLP-KRTDNEIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.5E-25564IPR009057Homeodomain-like
PROSITE profilePS5129416.608961IPR017930Myb domain
SuperFamilySSF466893.07E-3011108IPR009057Homeodomain-like
SMARTSM007173.6E-141363IPR001005SANT/Myb domain
PfamPF002497.7E-171461IPR001005SANT/Myb domain
CDDcd001672.41E-101661No hitNo description
PROSITE profilePS5129426.72362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-2665116IPR009057Homeodomain-like
SMARTSM007174.9E-1766114IPR001005SANT/Myb domain
PfamPF002492.5E-1667112IPR001005SANT/Myb domain
CDDcd001673.80E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGPWTPE EDQKLVAYIQ EHGHGSWRAL PQKAGLLRCG KSCRLRWANY  60
LRPDIKRGKF SAQEEQTIIQ LHALLGNRWS TIATHLPKRT DNEIKNYWNT HLKKRLLQMG  120
IDPVTHKPKS ESIMAVGRQS SNGSSNLSHM AQWESARLEA ESRLARESKL RAKGLWSASM  180
RNANVSSDIF SRLRSDSQGF DSDKEELKTR GLNSTGGFEC MKITQKWDKS QDLRLGAKSD  240
QCNSSALGGP FRGYKYNPLE NGQSENRASK TSYVSLLQQA MCPSAQGSKI LYNEAKKLVE  300
NQKNRQANAA ANAYNVHQSH ENCGESKYNL EKAHNDVQSS SDEENVEPSL DSVLVLILRC  360
VKRQEFLRTR SDLSELFKSL QGVDSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.38680.0needle| shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9P0V40.0A9P0V4_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.21e-102myb domain protein 16