PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi001344
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Trihelix
Protein Properties Length: 482aa    MW: 54512.5 Da    PI: 8.0666
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50072433PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-24247PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix28.15.4e-09103180284
   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                W++  + +L+   +++  +++rg+l k++W ++++++ +    + s +qCk kw+ l+k y k k + +       s+++y+++
  Psi001344 103 WPNTSIDVLLLKFEDTCFSVSRGRLGKTHWGRIADAVNAVCSaNYSGVQCKYKWNRLKKSYNKAKLHGET------SRFVYYKR 180
                99999999999999***********************88776377******************9876554......24556655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.1E-9105183No hitNo description
PRINTSPR019114.0E-26332349IPR020428Protein-tyrosine phosphatase SIW14-like, eukaryotic
Gene3DG3DSA:3.90.190.104.9E-29332475IPR029021Protein-tyrosine phosphatase-like
SuperFamilySSF527999.2E-33332473IPR029021Protein-tyrosine phosphatase-like
PfamPF031627.6E-56333480IPR004861Protein-tyrosine phosphatase, SIW14-like
PRINTSPR019114.0E-26369382IPR020428Protein-tyrosine phosphatase SIW14-like, eukaryotic
PRINTSPR019114.0E-26388402IPR020428Protein-tyrosine phosphatase SIW14-like, eukaryotic
PRINTSPR019114.0E-26405419IPR020428Protein-tyrosine phosphatase SIW14-like, eukaryotic
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0035335Biological Processpeptidyl-tyrosine dephosphorylation
GO:0004725Molecular Functionprotein tyrosine phosphatase activity
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MAMQRPSDXE AAHGSPTSTS TRAQHNKNNI KGGHELISRN HHNLNPNPXA ENFEAILFPG  60
LDCANLMASP SIQFQNPNEN RPALALKRIE TTKSSRAQKE ALWPNTSIDV LLLKFEDTCF  120
SVSRGRLGKT HWGRIADAVN AVCSANYSGV QCKYKWNRLK KSYNKAKLHG ETSRFVYYKR  180
VERIVQKASG EKLHEDEEEE EEEEEEEMAS EDDGVDSICE AASIESKPSS ASMSATEDDD  240
VHRRPQKRGV TLKSFGDKME QSMNNLAQSM KNIEKTRTDK MMKLLDAQLE ITSMLVQNNK  300
RLKPSDGVAA GRAWAMNEAG LMCQQQGRVS SFVPPLNFAM VDKGVYRSGF PNHANFPFLK  360
TLKLRSIIYL CPEPYSEVNM KFLRAEEIQI FQFGIIGYKE PIIGISEDDI RDALKILLDI  420
RNHPVLIHCK TGKHPTSCLV GCLRKIQNWC LATVFDEYQR FVGIKARVSD LQFIERFNVP  480
NT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1xri_A7e-693334793149At1g05000
1xri_B7e-693334793149At1g05000
2q47_A7e-693334793149Probable tyrosine-protein phosphatase At1g05000
2q47_B7e-693334793149Probable tyrosine-protein phosphatase At1g05000
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.10640.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LNY60.0B8LNY6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.15e-07Trihelix family protein