PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi001338
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 483aa    MW: 53379.3 Da    PI: 7.2954
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50071709PU_refUnigeneView CDS
PUT-183a-Picea_sitchensis-22990PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.7e-06244268123
                EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                +kC    C+k+F+++ +Lk H +tH
  Psi001338 244 FKCAygGCDKTFKNPQTLKMHHKTH 268
                899999******************9 PP
2zf-C2H2120.00066302320220
                EETTTTEEESSHHHHHHHH CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHi 20 
                +Cp C ++F   ++L+rH 
  Psi001338 302 RCPVCRRTFVGLYELRRHF 320
                8*****************6 PP
3zf-C2H210.60.0018360378523
                TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                +Cg+ F  k nL+ H +tH
  Psi001338 360 KCGMKFAFKCNLVAHKKTH 378
                7*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.32E-7240269No hitNo description
Gene3DG3DSA:3.30.160.604.0E-8242271IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003556.1E-4244268IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.198244273IPR007087Zinc finger, C2H2
PROSITE patternPS000280246268IPR007087Zinc finger, C2H2
SuperFamilySSF576678.19E-7300351No hitNo description
SMARTSM003550.23301324IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280301324IPR007087Zinc finger, C2H2
SMARTSM0035567331351IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.078331352IPR007087Zinc finger, C2H2
SMARTSM00355110357378IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
XEARLQRRNP SSNERDLAVV SFRTSGCLKI PEIDKEHRSE RRGTKKQEQN PKEEERQGYM  60
ALESFVSMPM SPPLMPISPV DYGAIAMSSD EMSIFNATDS MEGILQDDHS ASPFEGLCHG  120
HGHGGFSAAA GAFNAPTMHP NLVSTLKNVI SQQNLDDDLH FLHTPHHGFE DAGLASDDGF  180
LNYQTEAGFQ PPAEQQNNNN DDNKKKQAQQ KNRRSPKLGG DEEDREDRQI ATVSVDLIQN  240
RRPFKCAYGG CDKTFKNPQT LKMHHKTHYT DDAAEKRLGE QFLNNNTTGN CRAGHNKKIP  300
CRCPVCRRTF VGLYELRRHF GRKHSEGEKM YGCRKCGKRF YIEVDLRDHE KLCGEPIECK  360
CGMKFAFKCN LVAHKKTHPE CQDSSHSPPP PPLLPNEDSC SSSSSSSYRQ IHPHPTSLPV  420
ASVAAFSEDT SSAPASSSSP SSSSSAAASS MALMVSCGVK LEDISGFPRA ITPSALLGQE  480
PRN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.116830.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373214.13e-82zinc finger protein 467-like
TrEMBLB8LQV80.0B8LQV8_PICSI; Uncharacterized protein
STRINGPP1S339_18V6.11e-81(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.13e-12C2H2 family protein