PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi001331
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 484aa    MW: 52605.2 Da    PI: 5.4554
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50072220PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-7382PU_refplantGDBView CDS
PUT-183a-Picea_sitchensis-7383PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.60.00025424466855
                HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                r + R +++++a++ Lr+++P+         ++ a++Le A +++ksLq
  Psi001331 424 RRKLRKEKVKKAINLLRSIVPEgH------SMDTAAVLEVASQHLKSLQ 466
                5688999***************55......79****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.652416465IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.23E-4422470No hitNo description
SuperFamilySSF474593.53E-7422474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-5426477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MESPDIQVSC SNIPSPSLEH TGLKSKLQWT VQESCGLPIL SGMEHLQQSG QHLGAFEVNA  60
FQQRAHLRSE QCVSASAYAA PPRCPEQLKS VDGNSHAHSA NSTGLAAGFV TAITGDNASL  120
LEKHDYGAWN GGNSQELKQV QLLDGLEVQY SEAFSKRFII FDQTGSGVRV IVHPSLVYEF  180
PNLLPDSAKG LDKINAHNRV PQKESISQIP SVYNSTDRGT GLLAYREHMA PAFTALQGIR  240
KRRWLSAEAA GNGFVACSKQ EETGSQMSCN GSSRGGYQSQ SHEDTRDLEA LLGSDEEEDD  300
STGHTPSEAI TNDQQSGTQD EAHISNGIPT KKRRCECMEF GEQEVDFIPS AIQETAVLNG  360
KCSSDGVCFP PVASQESGIQ LECCNTVKDS DYRDEQFCDY STDNMTGNGS SNNSASKVGQ  420
PSSRRKLRKE KVKKAINLLR SIVPEGHSMD TAAVLEVASQ HLKSLQLKLE RLEANQNDKT  480
LSKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.143720.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLC0PSI60.0C0PSI6_PICSI; Uncharacterized protein