PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi001272
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 493aa    MW: 55693.3 Da    PI: 6.3402
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50823289PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-20780PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.44.5e-07831126
               --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
               ykt+lC  ++r G+C++  +C+FaHg
  Psi001272  8 YKTKLCTLYQR-GHCPR-QSCSFAHG 31
               9**********.*****.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.53E-5536IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-11637IPR000571Zinc finger, CCCH-type
SMARTSM003560.0017732IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.526733IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-5831IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MMFDRDLYKT KLCTLYQRGH CPRQSCSFAH GDAELRRFSG SGNGRREHRS GDLRDKLDRR  60
HSPHRRSSPA RDAKGRQTYA DQRSLPHDRG HSLSRSPPRG SERRERKRQR LDRHIGDVSP  120
NFNYLGDDTD HDHTKEVKSP YASSRDAFEE QLKDVESEID ALNDQKDDLE ISLEKRAHEA  180
NKLAAKNSEL EVTLSKEQED HKRLGSKIKK FVKAHLRLVR AQEEVKRSQA RLQKLVDEFP  240
LVETSRHANH VEDSNVNVLS DVELNHPIQK GLESNRGSEA AGIEKEDIVV EVVDADDNES  300
VQRNSSLHNR TEAVKFIGQH GSIRDRENKL EEAGLVVNSI HRLQALNDKE GKLITNKSED  360
NPNRGKNVRE GSLSPISVPE EKVKGWDAGF SLPSTGIAAH AEDEHVEAVD IDGREEITDE  420
LHPQKGNVTM LQRFPSIVGS LNTGKAFLRN VSPLKTVSAN HYNEYKGDDE EVDVDGVDAD  480
DQRIDLNVEA DMG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.69490.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NWI90.0A9NWI9_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.16e-21C3H family protein