PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Psi001104 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | bZIP | ||||||||||||
Protein Properties | Length: 533aa MW: 58160.7 Da PI: 6.0253 | ||||||||||||
Description | bZIP family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 49.6 | 8.3e-16 | 327 | 381 | 3 | 57 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 +lkr rr+ +NRe+ArrsR+RK+a + Le v++L eN +L k+l e+++++ Psi001104 327 DLKRMRRMLSNRESARRSRRRKQAHLSDLEMQVAQLRVENASLFKRLTEMSQKYN 381 79******************************************88887777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 9.8E-13 | 320 | 381 | No hit | No description |
SMART | SM00338 | 2.8E-17 | 325 | 389 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.427 | 327 | 381 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.1E-13 | 328 | 380 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.02E-11 | 329 | 380 | No hit | No description |
CDD | cd14702 | 2.53E-6 | 330 | 381 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 332 | 347 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF12498 | 1.3E-19 | 396 | 509 | IPR020983 | Basic leucine-zipper, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 533 aa Download sequence Send to blast |
MERVFSVDDI LGTFWKLDTQ GEGEGETGPS GDTAINRTTT TTKTSMNRSA SEWAFQRFIT 60 EASPIPPPSP SRSPSPHIPN HHDLDHKKKK KPSSSPTPTP PALVNVEEED EAEEEEMRED 120 VKAKKEEEEM REDVKAEKEE EDEKQRNTDK EEEVAAKPVV RNEPSSSSSL VAVNVKPLSP 180 LLKGTGSVME KGVVTHNNPQ DLESFLKQRL DLACAAVALT RASGIDFQGA PPLTFGAQHS 240 QNISMESRAG STVSVAQSSG AGSRPIYNGA LGHIVSQPIG IPALPPKPQS GASQIKTTTS 300 GSSREQTDDD ELEAEIEANQ STMDPSDLKR MRRMLSNRES ARRSRRRKQA HLSDLEMQVA 360 QLRVENASLF KRLTEMSQKY NDAAVDNRIL RADVEALRAK VKMAEDMVAR ATGVGHSIQN 420 TAQISQASGM RYMGGPLESP VTSGLQDSSR YSHSGQPIST QGMPCDISNM NDRNKELLTQ 480 NVGTKMGRTP SMQRVASLEH LQKRIRGGVT CGSTPWSGGW DIEGSPRIEN GGQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 341 | 348 | RRSRRRKQ |
2 | 343 | 348 | SRRRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Psi.5522 | 0.0 | shoot |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011621614.1 | 4e-72 | light-inducible protein CPRF2 isoform X1 | ||||
Refseq | XP_018830240.1 | 6e-72 | PREDICTED: light-inducible protein CPRF2-like isoform X1 | ||||
Refseq | XP_018830241.1 | 6e-72 | PREDICTED: light-inducible protein CPRF2-like isoform X2 | ||||
Swissprot | Q99090 | 1e-59 | CPRF2_PETCR; Light-inducible protein CPRF2 | ||||
TrEMBL | A9NUK0 | 0.0 | A9NUK0_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28770.2 | 1e-44 | bZIP family protein |
Publications ? help Back to Top | |||
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