PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi001046
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family CO-like
Protein Properties Length: 555aa    MW: 60621.2 Da    PI: 5.1625
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41649385PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-20829PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.35e-06334436
   zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
               ++C+ ++e + + +C+ ++  lC +C +++H g
  Psi001046  3 TMCDFCGEIRSTVYCRADSASLCLSCDEHIH-G 34
               68******99*********************.4 PP
2zf-B_box18.15.5e-064787542
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg...Htvvpl 42
                C+ ++ +++ + C+d +  +C++C  ++H++   H+++++
  Psi001046 47 LCDGCSVEPAAFSCNDHKLSFCHNCDRQSHSNspqHRRKSI 87
               7*****************************889***99876 PP
3CCT58.91.8e-20498541144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                R +a+ RYkeK+k R +eKkirY+sRKa+A+ R+RvKGrFvk+ 
  Psi001046 498 RGNAMIRYKEKKKARMYEKKIRYASRKARADVRKRVKGRFVKAG 541
                778999***********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.5E-7147IPR000315B-box-type zinc finger
PROSITE profilePS501199.229147IPR000315B-box-type zinc finger
CDDcd000213.24E-7333No hitNo description
PROSITE profilePS501199.034387IPR000315B-box-type zinc finger
SMARTSM0033614887IPR000315B-box-type zinc finger
PROSITE profilePS5101714.703498540IPR010402CCT domain
PfamPF062032.1E-15498540IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MDTMCDFCGE IRSTVYCRAD SASLCLSCDE HIHGANALSK RHLRTVLCDG CSVEPAAFSC  60
NDHKLSFCHN CDRQSHSNSP QHRRKSISYY TGCPSAAELA ELWDCELDRL GGDDQQGPSV  120
PGIGWGNSGG ENGSLETLLA SGIDAGFAQN LGSWIEPSAS PKVDLPLSSQ RNSNVNTMLF  180
DSEGSAGTMK AREDRQQQSK QKRAVVQQLL ALQKSQHQTL TEVQNHEEVH AYVPAQVQVE  240
VQSMESSLSR PLEDDFQIQS QHLERQQKGQ QQGKQSLQQQ KMQHVSLLIP ESEPLKSDTN  300
IEIAIQGDSF WRCGAASETN QLWDQNMQDL GICEDDDCCD AFHISDVDLI FENYEDIFGG  360
PQGESALMFE DLEAACSSMD KVVSIADPSG CNNNSLLASS APPAGYVVAL SSQEPGKEGA  420
APHPATGRTV KGVPGPNVPN NIRHPVQPAP ASLAQSLSSY SGDGNAADYH DCDVSPIFLK  480
GEPPWGSTNT DSAFLNARGN AMIRYKEKKK ARMYEKKIRY ASRKARADVR KRVKGRFVKA  540
GEAFDYDPLA TTGHY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.163400.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NUQ90.0A9NUQ9_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.18e-36B-box type zinc finger protein with CCT domain