PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi000963
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 592aa    MW: 65114.5 Da    PI: 9.443
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50071391PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-6828PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.3e-056688123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               + C+ C+k F r  nL+ H r H
  Psi000963 66 FICEVCSKGFQRDQNLQLHRRGH 88
               89*******************88 PP
2zf-C2H210.90.0014142164123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC  C+k++  +s+ k H +t+
  Psi000963 142 WKCDRCSKRYAVQSDWKAHSKTC 164
                58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.63E-66588No hitNo description
Gene3DG3DSA:3.30.160.603.8E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8036688IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.0E-4130163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.63E-6137162No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MADKERARQP PPNQFSTPSS ADGAGNISTA QQNPVKKRKR NLPGNPDPDA EVIALSPRTL  60
MATNRFICEV CSKGFQRDQN LQLHRRGHNL PWKLKQRTSS EMRKRVYICP ESTCVHHDPT  120
RALGDLTGIK KHFCRKHGEK KWKCDRCSKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRR  180
DSFITHRAFC DALAEDSTRI SEGLSRLPQV APSSSPGKSD VPSPNDRVPS HLAEGPVRSG  240
HSLQFLGHED KSTSTQQASN PIEHIHPSGF TYGTKTMQLG PVGLAGHEYE SQLRRNPHVF  300
PMPMSTTSTN SGSMYSSIYS SRFHGMNTAT FGGDLSPGND VNSDGNTSYH STPSMSATAL  360
LQKAAQMGAT ASNAPLLSAL RMAGSGLHSA WPSRREGLIA SNLKDQFQSF RPMDNDISAN  420
NSLRSQYSFS ESSIQQRSSE NPGHLHESSI DPRLQPFTPS GLYITENHMQ PDTFGGQFMD  480
PCTSFGGNGH PRKNMGESQL QGRIPMIDNR WGNLNLEVGG DKLTRDFLGV GEVAGGIPRA  540
LSVRDIHVNG RPQFASGKDH LNSYINDIKY PTDSPNSHGG KAQSPQKSWD VS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-34138201366Zinc finger protein JACKDAW
5b3h_F9e-34138201366Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010426610.11e-118PREDICTED: protein indeterminate-domain 2 isoform X1
TrEMBLB8LRQ30.0B8LRQ3_PICSI; Uncharacterized protein
STRINGXP_010426610.11e-118(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-111C2H2 family protein