PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi000796
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 720aa    MW: 74187 Da    PI: 9.5476
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50072405PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-14609PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-05123145123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++C+k F r  nL+ H r H
  Psi000796 123 FVCEICNKGFQRDQNLQLHRRGH 145
                89******************988 PP
2zf-C2H212.20.00057199221123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC +C+k++  +s+ k H +t+
  Psi000796 199 WKCDKCSKRYAVQSDWKAHSKTC 221
                58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.33E-7122145No hitNo description
Gene3DG3DSA:3.30.160.602.5E-5122145IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.949123145IPR007087Zinc finger, C2H2
SMARTSM003550.017123145IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280125145IPR007087Zinc finger, C2H2
SMARTSM00355220164194IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.8E-4187220IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.33E-7194219No hitNo description
SMARTSM00355140199219IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MLNGGLPAAA ASSQAVGGPG SGSRANWNLV VKLENSERTT PTMTQSNVTS AASGEGATVS  60
SAAATGGGGG SGAVQQSSAP LNNSSAQQQP GVPKRKRNLP GMPDPDAEVI ALSPKTLMAT  120
NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LRQRTSKEIR KRVYICPEPS CVHHDPSRAL  180
GDLTGIKKHF CRKHGEKKWK CDKCSKRYAV QSDWKAHSKT CGTREYRCDC GTLFSRRDSF  240
ITHRAFCDAL AEESARVTVN NTEPVATRTT TNSSSDDGPN PCPCPPDSHK VSISSTGGAV  300
APPPLSAGWG GQAPGGGGGG GGGGGAGPRL SLWLGPGPGG PGPPPTLDSA SASSSTQFNV  360
MDGTGTYPYP FLMRASNNPS ERSAAAAELG RPTGGGGGGG GRGFMAPASA SSLFASLLAS  420
GGLPAAQTPT GFSELIGAMT RGGNGSISTS TSSATTAAPA VFSTGIPAIF SHPQPPQVHH  480
QQHNNTATAQ MSATALLQKA AQMGATAASN NPSLLRGFGG LAGHDNSWPP MMAAANHSSE  540
PYPLLRRLTE GIMPMPMPTS MPSSSSSSLD QVTMQELMNS LSTTASLGSL GLLLQSPLLS  600
PHMSNGNGSI GDQTGACGII KEEELGTSMK PTTLDFLGLG GSHGRTLSHT DYAMITSMSS  660
TGATGNEVAV PSSFTNHNSG EINKKQHSSS PAKFGTAHSK EIIAYQWGIK RKVGQVLLQA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-35195258366Zinc finger protein JACKDAW
5b3h_F6e-35195258366Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.142450.0needle| shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024365599.11e-136protein indeterminate-domain 1-like isoform X1
RefseqXP_024365607.11e-137protein indeterminate-domain 7-like isoform X2
TrEMBLB8LP080.0B8LP08_PICSI; Uncharacterized protein
STRINGPP1S165_3V6.11e-135(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-114indeterminate(ID)-domain 2