PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi000717
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ARF
Protein Properties Length: 920aa    MW: 102171 Da    PI: 6.3855
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S38857446PU_unrefUnigeneView CDS
gnl|UG|Psi#S50071317PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-17832PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.21.8e-24175276199
                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++gr+W++++i+r++++r++lt+GW+ Fv+ ++L +gD v+F   +++++el++
  Psi000717 175 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLHGREWRFRHIFRGQPRRHLLTTGWSVFVSYKRLVAGDAVLFL--RDENGELRL 271
                99****************************963.3445679************************************************..5689999** PP

                EEE-S CS
         B3  95 kvfrk 99 
                +++r+
  Psi000717 272 GIRRA 276
                **997 PP
2Auxin_resp126.81.3e-41301382182
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                 +aha++tks+F+++YnPr+s++eFv++++k++k++++++s+GmRfkm+feted+ err++Gt+vg+ d+dp+rWpnS+Wrs 
   Psi000717 301 VAHAVATKSMFHIFYNPRTSPTEFVIPYHKYVKSFNHSFSIGMRFKMRFETEDATERRYTGTIVGIGDVDPMRWPNSEWRSF 382
                 79******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.03E-45164303IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.1E-45167290IPR015300DNA-binding pseudobarrel domain
CDDcd100178.53E-24173275No hitNo description
PROSITE profilePS5086313.817175277IPR003340B3 DNA binding domain
PfamPF023621.5E-22175276IPR003340B3 DNA binding domain
SMARTSM010191.3E-25175277IPR003340B3 DNA binding domain
PfamPF065075.9E-38301383IPR010525Auxin response factor
SuperFamilySSF542773.58E-11790868No hitNo description
PROSITE profilePS5174525.001792874IPR000270PB1 domain
PfamPF023093.5E-6840881IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 920 aa     Download sequence    Send to blast
MESGLNDPHG LQHHSADDTN GDGDKRIVVE TGNSVCPELW HACAGPLISL PPKGSRVVYF  60
PQGHLEQIAD NELHKVGRGS FLNINQAVTP MAEEASSAAS LNIPPSSISQ AVNQQMLSYK  120
LPPQILCRVL NVNLHADQEM DEVYAQLTLV PDSEKSEKCI EEQLPVPPSS TPHMFCKTLT  180
ASDTSTHGGF SVPRRAAEDC FPPLDYSQQR PSQELVAKDL HGREWRFRHI FRGQPRRHLL  240
TTGWSVFVSY KRLVAGDAVL FLRDENGELR LGIRRASQQQ SSVPSSVLSS HGIHSGVLAA  300
VAHAVATKSM FHIFYNPRTS PTEFVIPYHK YVKSFNHSFS IGMRFKMRFE TEDATERRYT  360
GTIVGIGDVD PMRWPNSEWR SFKVGWDEHA AQERQERVSP WEIEPFTSAT GLNALPGPRV  420
KRLRTSFPTA PTDLSIPDGD TLSDFGESSR FQKVLQGQEM SPLKTPFRTD IMDLMKYRVC  480
DSKALDTEHE VSGGARRTGH EIWPPSGRTD ISPSSDLSCD KRKYGRLYGL ETPSSINCPS  540
AKSPDTKQQQ LRYFRQLQGR ENAVALPLNT GISTASDSLL SPLFKSPQAN NSELHLSTIS  600
PRSVVSDSRK SDLYWDFWQP FPSGQSPSQT ASAIPKTVAR WKSSSTSPCL SEDNEGASEE  660
VRISPDYPSK ETMYFSFKQH HLASETPCPQ AKDISKVKGE RNCKLFGFSL LKESACVDDP  720
ISSAMTEDGV SSDGGLHVPP GDGPFQTAHS KHSDQSEKEL HNHYGHEITL RSMEQEISSY  780
AKLRNSVQAS GRSCTKVHKQ GNAVGRAVDL SKLRGYDELI RELEHLFNME GLLSTPEKGW  840
HIVYTDNEGD IMLVGDDPWQ EFCNIVCKIL ICTQEEVQKM TPGMFSEDAQ SCFEQQPTTV  900
EVSKCSIDGQ DSSSPLGSGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1383340817357Auxin response factor 1
4ldw_A1e-1383340817357Auxin response factor 1
4ldw_B1e-1383340817357Auxin response factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LRW70.0B8LRW7_PICSI; Auxin response factor
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-152auxin response factor 2