PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi000704

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

SBP

Protein Properties

Length: 972aa MW: 109279 Da PI: 6.7979

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S50071782	PU_unref	Unigene	View CDS
PUT-183a-Picea_sitchensis-2574	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	113.9	9.3e-36	159	235	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv++Cead+s++k yhrrh+vC +++a++v+++++ qr+CqqC++fh l++fDe+krsCrr+L++hn+rrr+k Psi000704 159 RCQVPSCEADISHLKGYHRRHRVCLCCANAATVVLDDVPQRYCQQCGKFHLLTDFDEGKRSCRRKLERHNNRRRRKP 235 6************************************************************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	28.872	157	234	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	3.3E-26	157	221	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.88E-32	158	239	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.5E-25	160	234	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 972 aa Download sequence Send to blast
MADLLDDSVA SVLDAGNWEW DSVLDFSIGS LPHILPWQSE ELSDDLSERL LPSQVLEVNQ 60 AREVQNASPR NRSQDAEEEE KAAASSRIRK REVQNASPRN RSQDAEEEEK AAASSRIRKR 120 DPRLICSNFL AGRVPCACPE MDNMEEELSR KRAKVVVLRC QVPSCEADIS HLKGYHRRHR 180 VCLCCANAAT VVLDDVPQRY CQQCGKFHLL TDFDEGKRSC RRKLERHNNR RRRKPVNVVE 240 ASVQEQTLRA ESALQSADTE PHNNGKSGQA SKSFSYPGCG EKQSSSGSEE RNISEVEQPY 300 KGDSSLKNVG SRSDDVSKIS SSSMPVKVST ELEGKLFPER DIGSGEKFDD EDVRVVENSR 360 AIMLVGPRNG DNGSTYAELN EQSYTGMPME ENSHKDRFPH NISGRSEKDE GAGPLKSSLS 420 SNRHDKHLSY TSVCPTGRIS FKLYDWNPAE FPRRLRQQIL QWLADMPIEL EGYIRPGCTI 480 LTAFIALPQF MWEKLFANSP GYIHSLLNGS ESILSGKGNM LVYLNDTIMQ IKNGEACLVD 540 TKMDMRIPKL LSVHPISFEA GYPIEIVACG RNLLQSKYRF LISFHGNYLH YGTCEAIPLG 600 NPGSSFRSKE NIFHSSNHES FKIFIPSTDP RLFGPAFIEV ENEYGISNFI PILIGDKEIC 660 SEFQMLEQEV VKSGFCCRSN HGLAIGSSNS DICEQNVVKR QSILELLLDI GWVLKDPEPD 720 ENKVPVNFVH IQRLNCLFSY LINGHLLAMT EKVLHSPKVV KMLRQVYGKS NEVNGADIKL 780 LQNYVEHAWQ SLRKKPPIIK LLPISSGFLD NVVLQGCPSS MKIATLSCNQ QPRKVSQESQ 840 EMEPLLEIQT ETRPSSGIES IDTRVLSVEE NNMLTPLLEK ECSSSIASDM KYNSTWRGPK 900 IEVAEYTRKM KVCLKGDIRV DRRIFILAIT VISVCAGICV VLQHPHQVME ISMSLRRCLS 960 GLRKAHEDIS RP

Sequence ? help Back to Top

Protein Sequence Length: 972 aa Download sequence Send to blast

MADLLDDSVA SVLDAGNWEW DSVLDFSIGS LPHILPWQSE ELSDDLSERL LPSQVLEVNQ  60
AREVQNASPR NRSQDAEEEE KAAASSRIRK REVQNASPRN RSQDAEEEEK AAASSRIRKR  120
DPRLICSNFL AGRVPCACPE MDNMEEELSR KRAKVVVLRC QVPSCEADIS HLKGYHRRHR  180
VCLCCANAAT VVLDDVPQRY CQQCGKFHLL TDFDEGKRSC RRKLERHNNR RRRKPVNVVE  240
ASVQEQTLRA ESALQSADTE PHNNGKSGQA SKSFSYPGCG EKQSSSGSEE RNISEVEQPY  300
KGDSSLKNVG SRSDDVSKIS SSSMPVKVST ELEGKLFPER DIGSGEKFDD EDVRVVENSR  360
AIMLVGPRNG DNGSTYAELN EQSYTGMPME ENSHKDRFPH NISGRSEKDE GAGPLKSSLS  420
SNRHDKHLSY TSVCPTGRIS FKLYDWNPAE FPRRLRQQIL QWLADMPIEL EGYIRPGCTI  480
LTAFIALPQF MWEKLFANSP GYIHSLLNGS ESILSGKGNM LVYLNDTIMQ IKNGEACLVD  540
TKMDMRIPKL LSVHPISFEA GYPIEIVACG RNLLQSKYRF LISFHGNYLH YGTCEAIPLG  600
NPGSSFRSKE NIFHSSNHES FKIFIPSTDP RLFGPAFIEV ENEYGISNFI PILIGDKEIC  660
SEFQMLEQEV VKSGFCCRSN HGLAIGSSNS DICEQNVVKR QSILELLLDI GWVLKDPEPD  720
ENKVPVNFVH IQRLNCLFSY LINGHLLAMT EKVLHSPKVV KMLRQVYGKS NEVNGADIKL  780
LQNYVEHAWQ SLRKKPPIIK LLPISSGFLD NVVLQGCPSS MKIATLSCNQ QPRKVSQESQ  840
EMEPLLEIQT ETRPSSGIES IDTRVLSVEE NNMLTPLLEK ECSSSIASDM KYNSTWRGPK  900
IEVAEYTRKM KVCLKGDIRV DRRIFILAIT VISVCAGICV VLQHPHQVME ISMSLRRCLS  960
GLRKAHEDIS RP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul5_A	3e-40	157	237	3	83	squamosa promoter binding protein-like 7
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	220	232	RRKLERHNNRRRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B8LQP1	0.0	B8LQP1_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.3	1e-104	squamosa promoter binding protein-like 7