PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF ID | Psi000567 | ||||||||||||||||
Organism | |||||||||||||||||
Taxonomic ID | |||||||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||||||||||
Family | NF-YB | ||||||||||||||||
Protein Properties | Length: 206aa MW: 22569.1 Da PI: 7.6164 | ||||||||||||||||
Description | NF-YB family protein | ||||||||||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 186 | 2.8e-58 | 8 | 104 | 1 | 97 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 v+eqdrflPianv+rimkk+lPan+k+skdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfedyveplk+yl+kyre+egek Psi000567 8 VKEQDRFLPIANVGRIMKKALPANGKVSKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLHKYREMEGEK 104 58*********************************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 9.6E-56 | 4 | 123 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.11E-42 | 11 | 126 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.9E-28 | 14 | 78 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 4.5E-21 | 42 | 60 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 45 | 61 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 4.5E-21 | 61 | 79 | No hit | No description |
PRINTS | PR00615 | 4.5E-21 | 80 | 98 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 206 aa Download sequence Send to blast |
MGGSDFSVKE QDRFLPIANV GRIMKKALPA NGKVSKDAKE TVQECVSEFI SFITGEASDK 60 CQREKRKTIN GDDLLWAMTT LGFEDYVEPL KIYLHKYREM EGEKVSMAKQ GDQIPSKEGN 120 TSINGSSIEN SNANAYSGMN PSSYNRVQSQ SLPHMQQQAA YGQPPGGMVY GHHGHMIGAY 180 NMAAPNSSGG NSSGQQQQQQ APRGQW |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 1e-50 | 3 | 99 | 1 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Psi.7007 | 0.0 | shoot |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024396797.1 | 5e-75 | nuclear transcription factor Y subunit B-3-like | ||||
Refseq | XP_024396798.1 | 5e-75 | nuclear transcription factor Y subunit B-3-like | ||||
Swissprot | O23310 | 5e-66 | NFYB3_ARATH; Nuclear transcription factor Y subunit B-3 | ||||
TrEMBL | A9NR95 | 1e-152 | A9NR95_PICSI; Uncharacterized protein | ||||
STRING | PP1S83_179V6.2 | 2e-74 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G14540.1 | 5e-68 | nuclear factor Y, subunit B3 |
Publications ? help Back to Top | |||
---|---|---|---|
|