PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||||||
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TF ID | Psi000440 | ||||||||||||||||
Organism | |||||||||||||||||
Taxonomic ID | |||||||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | Whirly | ||||||||||||||||
Protein Properties | Length: 303aa MW: 34111 Da PI: 9.5539 | ||||||||||||||||
Description | Whirly family protein | ||||||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 164.7 | 2.5e-51 | 125 | 262 | 2 | 139 |
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpd 101 vyk+ +al++k+++p++ +l+ g +++ ++G ++le+a+a+++r+ydW+kk+ als+ ev++l++l++ escef hdp++++s++Gk+ k+lkv l d Psi000440 125 VYKGEGALTMKPKLPDYITLNMGGVTVAKEGCMFLEFAPAVGPRQYDWSKKKIIALSVVEVGTLLSLGPDESCEFTHDPFMGKSEAGKIMKVLKVGNLQD 224 9*************************************************************************************************** PP Whirly 102 GsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 G+f+nlsvt + ++esfs+P++k+ef+v++s+++ Psi000440 225 TGGYFFNLSVTDRIADVDESFSIPITKGEFSVMQSIFN 262 ***********************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 9.4E-73 | 113 | 284 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 3.14E-59 | 117 | 292 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 2.0E-51 | 125 | 260 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
XEVWRQAELK TPHTDNLRLL LSPEVWRQAE LKTPHTDNLQ PQQKKKMLRL KVLGARILGG 60 SATRRFQPLC MPFSSSHWYS KVAKASSNDE LSEVRGLSSS LDHYALTQPE FLRRQTNKIY 120 VKHTVYKGEG ALTMKPKLPD YITLNMGGVT VAKEGCMFLE FAPAVGPRQY DWSKKKIIAL 180 SVVEVGTLLS LGPDESCEFT HDPFMGKSEA GKIMKVLKVG NLQDTGGYFF NLSVTDRIAD 240 VDESFSIPIT KGEFSVMQSI FNFILPYLMG WHAYMDSTKL NESGHFKSGG PSIAKRPDLE 300 WGR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4koo_A | 6e-68 | 118 | 279 | 8 | 169 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_B | 6e-68 | 118 | 279 | 8 | 169 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_C | 6e-68 | 118 | 279 | 8 | 169 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_D | 6e-68 | 118 | 279 | 8 | 169 | Single-stranded DNA-binding protein WHY1, chloroplastic |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Psi.4881 | 0.0 | shoot |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts, maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. In nucleus, modulates telomere length homeostasis by inhibiting the action of the telomerase at the extreme termini of chromosomes. Is recruited to a distal element upstream of the kinesin KP1 to mediate the transcriptional repression of KP1. Is required for full salicylic acid-dependent plant disease resistance responses. Can bind double-stranded DNA in vivo. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:17217467, ECO:0000269|PubMed:19666500, ECO:0000269|PubMed:19669906, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:21911368}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA) and infection by H.parasitica. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:19669906}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010256524.1 | 4e-71 | PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic-like | ||||
Swissprot | Q9M9S3 | 3e-70 | WHY1_ARATH; Single-stranded DNA-binding protein WHY1, chloroplastic | ||||
TrEMBL | A9NLD1 | 0.0 | A9NLD1_PICSI; Uncharacterized protein | ||||
STRING | XP_010256524.1 | 2e-70 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14410.1 | 1e-72 | ssDNA-binding transcriptional regulator |