PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi000344
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 391aa    MW: 43042.6 Da    PI: 4.7304
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S26032472PU_unrefUnigeneView CDS
gnl|UG|Psi#S50072007PU_refUnigeneView CDS
PUT-183a-Picea_sitchensis-592PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.6e-20181231256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+ge
  Psi000344 181 LYRGVRQRH-WGKWVAEIRLPRD---RTRLWLGTFDTAEEAAMAYDKAAYRLRGE 231
                59******9.**********966...4**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.95E-33180240No hitNo description
PROSITE profilePS5103223.288181238IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-32181239IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-23181239IPR016177DNA-binding domain
SMARTSM003805.0E-37181244IPR001471AP2/ERF domain
PfamPF008474.8E-14182231IPR001471AP2/ERF domain
PRINTSPR003673.4E-11182193IPR001471AP2/ERF domain
PRINTSPR003673.4E-11204220IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MDLITDPLNS EGPDRQGFTF PTLVRHQNLG FSNSSMQEMF EESASSSSSP SNGDAKLEGL  60
DAWQNLRMPE ASQAFGNSEI LCSSSSFFPN LPSNGFGHSD GLVWRPSFQG QNQCSGESIR  120
SAMVLYDLLH AQQIQQLQQQ LQLQQHQSAA ASIHQMGRNP LGPRAQPMKL HSSGLSKAAK  180
LYRGVRQRHW GKWVAEIRLP RDRTRLWLGT FDTAEEAAMA YDKAAYRLRG EYARLNFPHL  240
KRHLEANSFA PWTGNSVLPS AVDAKLQAIC QSLKLPMEKM SKTEESEEIS CAYENSGSLG  300
SVQDEDAKKN DVVSVKSETC ESDSSDDSTI TALNSAGESE SPSASKSETQ ADTETDTLCS  360
MPSFSASSIW AELDDYLLSI PSLDINWDVL S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-20180238160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.1280.0needle| shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011621406.11e-54ethylene-responsive transcription factor ERF060
TrEMBLB8LQ350.0B8LQ35_PICSI; Uncharacterized protein
STRINGERM942006e-55(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.11e-33ERF family protein