PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi000306
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 426aa    MW: 46676.4 Da    PI: 4.6257
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S26059061PU_unrefUnigeneView CDS
gnl|UG|Psi#S42989901PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-7857PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.7e-19108157255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a +k+++g
  Psi000306 108 VYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEAKRIRG 157
                69*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.617108165IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-31108166IPR001471AP2/ERF domain
PfamPF008471.5E-12108157IPR001471AP2/ERF domain
SMARTSM003805.9E-34108171IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-22108166IPR016177DNA-binding domain
PRINTSPR003671.4E-11109120IPR001471AP2/ERF domain
CDDcd000181.37E-33109167No hitNo description
PRINTSPR003671.4E-11131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MCGGAIISDF IPANRSRRLT ARDIWPDFDT FAEYINGGAV PESFSKSGSF DKGSPDSNEG  60
YKQKNKPSKG FVESKQEFSS GGGNEAIPPL KDFEGPVAKS AGRKRKNVYR GIRQRPWGKW  120
AAEIRDPRKG VRVWLGTFNT AEEAARAYDA EAKRIRGKKA KLNFADDSCF ANLGSNKKVP  180
GKINRKVKSS SKDVCRSDVP IYGYDDMEYG DLEFSKPGAP FQSNSNASTV QSSEHSNLSQ  240
TLQKSCSCEI CSYSYSEVSN LMPTAYGDAV NFEQVKSSQP VGYFDSDHSS MSFEGAHFPW  300
AYDTKTPEIS SVCDDANEST FVDIKPQVDD VVKDGTVDTP IEVDGGTGGF YKTEDNNVEL  360
EFSDLESYLG LTEDPNLNAT VNQSIEDAGH AVGSFPDVQG SMESWLYDDL PISGLVFQNS  420
LSSCFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-21109164359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.29120.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9RWH53e-90A0A0C9RWH5_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_8720_1929 transcribed RNA sequence
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.19e-31ethylene-responsive element binding protein