PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_96.g503.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family GATA
Protein Properties Length: 443aa    MW: 48084.2 Da    PI: 7.1441
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_96.g503.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.31.6e-16370402133
                                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                                          C nCg+t+Tp+WR gp g++tLCnaCG++y+k 
  model.Picochlorum_contig_96.g503.t1 370 CLNCGSTETPQWRCGPLGPRTLCNACGVRYKKG 402
                                          99*****************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.28E-12361402No hitNo description
PROSITE profilePS5011412.334364400IPR000679Zinc finger, GATA-type
SMARTSM004011.6E-10364415IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.8E-13368401IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.30E-15369418No hitNo description
PfamPF003204.1E-14370402IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MSSSPSIPRL VAQGSLHSPD LIQTDTTWNL ISPDSAVVEK ESHGEAIKNC FDDLEKEIKS  60
STGHGSAKPP IYKKNNTIEK KPSLGQMPSP GAHPLDVQQG GQPSRQTSLG ADFGLLRTKT  120
SSGSQNVFNE VLDQLTSQEE ILPRQASLYT LPSMTFLESL LDEMDSRNTS QGILPPEPPL  180
YWPVECFDLP ELDLPANGVE SLEQLGLQSP QMPRPKEAYS CPAIHNNSSN DSIKCDRDVD  240
GGQPPSSPFM GIPYAPTAGS AAPSPQKPSQ SQMRQQSSSF EDDEEEYLEY LKTSMQTSKS  300
GRCRKVANFV AGQKRKSHAI SQFSAPAEYG NRKSLSGVSH QTKTLQVEAE VASAHLKKTQ  360
KVRKGKATVC LNCGSTETPQ WRCGPLGPRT LCNACGVRYK KGLPLTCWPL RNGMILPPGA  420
ELPPNIIVPE GMTIVTQPAR QY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1313317KRKSH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2201430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.17e-14GATA transcription factor 9