PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_87.g285.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family ARR-B
Protein Properties Length: 504aa    MW: 54648 Da    PI: 6.307
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_87.g285.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like871.9e-27187240155
                              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                          kpr++W+ e+H++Fv av+ L G++kA+Pk+il+lm+v+gLt+e+v+SHLQkYRl
  model.Picochlorum_contig_87.g285.t1 187 KPRVVWSVEMHQQFVYAVNTL-GIDKAVPKRILDLMNVEGLTRENVASHLQKYRL 240
                                          79*******************.********************************8 PP
2Response_reg84.92.4e-28201311109
                                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.....ESEEEEESSCTTSEHHHHHHHH.HHH CS
                         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd.....pDlillDiempgmdGlellkei.ree 68 
                                          vl+vdD+p  ++++  +l++ +y ev++ ++g++al++l++++     +Dl+l D+ mp+mdG++ll++i  e 
  model.Picochlorum_contig_87.g285.t1  20 VLVVDDDPMCLKVVSAMLKRCNY-EVDTESNGHQALDKLRQMQengcqFDLVLSDVYMPDMDGFKLLESIgLEL 92 
                                          89*********************.***************999999*************************5554 PP

                                          TTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
                         Response_reg  69 epklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                                            ++p+i++++ ++ + +l+ +  Ga dfl Kp+ +eel++
  model.Picochlorum_contig_87.g285.t1  93 --EVPVIMMSSDSDTNVVLRGVTHGAVDFLIKPVRIEELRN 131
                                          ..6************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.6E-1211475IPR017053Response regulator B-type, plant
SuperFamilySSF521723.56E-3717145IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.5E-4117153No hitNo description
SMARTSM004481.0E-3118133IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.68419137IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.1E-2520131IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.87E-3121137No hitNo description
SuperFamilySSF466893.94E-19185244IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-28186245IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-23187240IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MSRQEAGGSE GTFSPAGLKV LVVDDDPMCL KVVSAMLKRC NYEVDTESNG HQALDKLRQM  60
QENGCQFDLV LSDVYMPDMD GFKLLESIGL ELEVPVIMMS SDSDTNVVLR GVTHGAVDFL  120
IKPVRIEELR NVWQHVIRRR SSQMSRGATA EESGVEQDIN SRTSQGTKRK DVEVIRAEHE  180
GGSTGKKPRV VWSVEMHQQF VYAVNTLGID KAVPKRILDL MNVEGLTREN VASHLQKYRL  240
YLKRVEGVAG KGNVAVVKGG VPRNVDRLNG KPPLQNKVPK QSKSCGTSRA ESSDAERKLN  300
TLHASGSSPN LQGISSSHWS QPHGYYNLHG QIYGNSVRMN ATGAPPTMMG WQNQNGVPMA  360
TPIQYANVPS TSAFYQGSGH MYPAQVPPIN GQMGVTNNNN VLHSAIDSSQ RPSCTEAHVN  420
GSTNATGNAP GSDNEFDTVV NNNTNVHSST DDASHNKIAT DILRSGSSGL DDDGLPNIAG  480
LDKNHDPDDD VLDMFIKGME GET*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-22186245463ARR10-B
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP12201516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.13e-86response regulator 2