PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

model.Picochlorum_contig_86.g455.t1

Organism

Picochlorum sp. SENEW3

Taxonomic ID

1470871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum

Family

HB-other

Protein Properties

Length: 1251aa MW: 140375 Da PI: 5.1421

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
model.Picochlorum_contig_86.g455.t1	genome	Rutgers	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	51	2.5e-16	5	60	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 rk t+ t+eql++Lee F ++++p+ +++++LA+++gLt +qV vWF rR k+k+ model.Picochlorum_contig_86.g455.t1 5 RKVTKKTPEQLKILEEGFSRDKNPDDAAKADLASRTGLTVDQVIVWFSHRRRKDKR 60 566899************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.273	1	61	IPR001356	Homeobox domain
SMART	SM00389	5.7E-18	3	65	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.94E-15	4	65	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-17	5	63	IPR009057	Homeodomain-like
CDD	cd00086	9.36E-15	5	62	No hit	No description
Pfam	PF00046	1.0E-13	5	60	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	36	59	IPR017970	Homeobox, conserved site
PROSITE profile	PS50827	10.447	328	388	IPR018501	DDT domain
Pfam	PF02791	1.2E-7	332	382	IPR018501	DDT domain
Pfam	PF05066	7.7E-12	493	560	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	0.0012	640	679	IPR028942	WHIM1 domain
Pfam	PF15613	2.8E-9	805	880	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1251 aa Download sequence Send to blast
MQEARKVTKK TPEQLKILEE GFSRDKNPDD AAKADLASRT GLTVDQVIVW FSHRRRKDKR 60 EQQVQALWQM GNEEGYDDID VDELSESDKQ AFHEMKQIME IAKGRLESYR EDGPPLGLYF 120 DDIPTIPIHA AKGGTGAVER AWKAKQELNR LEASIRKEQE RLVREKEKND TRMAKAREKE 180 LVRLENERRK QLERTRREAK KEEERRLKEQ TRIMNLQLKE KRRLEAAKEK EMKRLKKLRE 240 REEKKKEKEM IKALSKQEKE ALRTRSAHTS QKDDLDIEWE ELVQKYKSAN DISNGVDFAE 300 GETPGLVRPE FPPAGVDMVD LGPKGVGESF QGTLLSSWTF LSSFSEILAL DCPSVDLLLQ 360 SLIDGYASKD LADIHIALLR LIQVDAEEGN AVEYNANAKG EGHAAGSLFV GPRLLEEAWA 420 WGFDVESWRA HLNEVTWPEV CRQMCISAGF GRRRPARKAK KGKDGAGKPG EDLVVGENGK 480 LELQLPPRLS ESSVKGACWM VLKDAGYQGL RVEEIAKRIQ KMGLRDLRTS RTPETSVAGA 540 MGRDVLFERI APATYALESF RSRYADLIGQ KKGGNETSKD NEDQSAVDED VSMKDAEEEN 600 QEENLSAEAE DIDEDDVDED DDDMEEDQDN LAEQNTESRE GEPWLAKLKE SSYDSLSLDE 660 KSALLSTLCQ LALDSTTARL VINARQEEQM CIKRSKIEDD KLESSLLKHR KQLEQIVNAR 720 KNALKAEEEL RKIDPAQESN PQAEASGSAF EKSKAEIDLE AKVALAEKKI MGYIGQKNSI 780 TNEMLKERAR KRAEEALKEL SLNSVRFEPL GCDRRYNRYY RFCSDEKRAV PGSTKGRIYF 840 ENPQTGQLKA IVSEQALQEL MRSLNPKGPR ERELKASLVR IEDDVISNMP SSSWNELSDV 900 ASTRVMLSCV DLCPCAHSII GSLAGSQAKD DIVLKVREAI DTICKALEET QLKSDFNKED 960 FVSKLQKSES LGDIKQCLGD LEASILPEYV HSGFPLEPLL VRGAWISIGA EVATALPGST 1020 IADVMLPMSP DPKTGAPPKA ETQDGRDALA KRVPLSWLPE TPASMALRVL ALDTALRYRR 1080 DECGRETMTE FQFSLRPYRS RGSKNGLVES MSVRDYGRVD PTHFAKFPYR LLFGPRIDFE 1140 ISKEELLSDI QKESDEPLSS VLYKRQPIGT GRGRGRGRGR GSRRVSAGRG EGIKQQNTEE 1200 KLGAHEVKDE ADDVAPGTAN GQTPEEAQGH TPLDSSNSLR SPASSSDFVA *

Sequence ? help Back to Top

Protein Sequence Length: 1251 aa Download sequence Send to blast

MQEARKVTKK TPEQLKILEE GFSRDKNPDD AAKADLASRT GLTVDQVIVW FSHRRRKDKR  60
EQQVQALWQM GNEEGYDDID VDELSESDKQ AFHEMKQIME IAKGRLESYR EDGPPLGLYF  120
DDIPTIPIHA AKGGTGAVER AWKAKQELNR LEASIRKEQE RLVREKEKND TRMAKAREKE  180
LVRLENERRK QLERTRREAK KEEERRLKEQ TRIMNLQLKE KRRLEAAKEK EMKRLKKLRE  240
REEKKKEKEM IKALSKQEKE ALRTRSAHTS QKDDLDIEWE ELVQKYKSAN DISNGVDFAE  300
GETPGLVRPE FPPAGVDMVD LGPKGVGESF QGTLLSSWTF LSSFSEILAL DCPSVDLLLQ  360
SLIDGYASKD LADIHIALLR LIQVDAEEGN AVEYNANAKG EGHAAGSLFV GPRLLEEAWA  420
WGFDVESWRA HLNEVTWPEV CRQMCISAGF GRRRPARKAK KGKDGAGKPG EDLVVGENGK  480
LELQLPPRLS ESSVKGACWM VLKDAGYQGL RVEEIAKRIQ KMGLRDLRTS RTPETSVAGA  540
MGRDVLFERI APATYALESF RSRYADLIGQ KKGGNETSKD NEDQSAVDED VSMKDAEEEN  600
QEENLSAEAE DIDEDDVDED DDDMEEDQDN LAEQNTESRE GEPWLAKLKE SSYDSLSLDE  660
KSALLSTLCQ LALDSTTARL VINARQEEQM CIKRSKIEDD KLESSLLKHR KQLEQIVNAR  720
KNALKAEEEL RKIDPAQESN PQAEASGSAF EKSKAEIDLE AKVALAEKKI MGYIGQKNSI  780
TNEMLKERAR KRAEEALKEL SLNSVRFEPL GCDRRYNRYY RFCSDEKRAV PGSTKGRIYF  840
ENPQTGQLKA IVSEQALQEL MRSLNPKGPR ERELKASLVR IEDDVISNMP SSSWNELSDV  900
ASTRVMLSCV DLCPCAHSII GSLAGSQAKD DIVLKVREAI DTICKALEET QLKSDFNKED  960
FVSKLQKSES LGDIKQCLGD LEASILPEYV HSGFPLEPLL VRGAWISIGA EVATALPGST  1020
IADVMLPMSP DPKTGAPPKA ETQDGRDALA KRVPLSWLPE TPASMALRVL ALDTALRYRR  1080
DECGRETMTE FQFSLRPYRS RGSKNGLVES MSVRDYGRVD PTHFAKFPYR LLFGPRIDFE  1140
ISKEELLSDI QKESDEPLSS VLYKRQPIGT GRGRGRGRGR GSRRVSAGRG EGIKQQNTEE  1200
KLGAHEVKDE ADDVAPGTAN GQTPEEAQGH TPLDSSNSLR SPASSSDFVA *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	53	58	RRRKDK
2	53	60	RRRKDKRE
3	1171	1180	RGRGRGRGRG

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP5105	8	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	8e-31	homeobox-1