PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | model.Picochlorum_contig_84.g502.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
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Family | E2F/DP | ||||||||
Protein Properties | Length: 367aa MW: 40367.8 Da PI: 6.7575 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 43.7 | 4.4e-14 | 34 | 97 | 3 | 71 |
E2F_TDP 3 eksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 +++Lr+lt +fl + +++++++a++L d+ rRR+YDi+ V+ +++++k k++++w+g model.Picochlorum_contig_84.g502.t1 34 RQTLRMLTAHFLGQYGADVGVEIHVDDAAEKL---DT--VRRRVYDIMAVFAEVGVVSKAGKSKYTWHG 97 679*************9999************...66..8***************************98 PP | |||||||
2 | E2F_TDP | 24.8 | 3.6e-08 | 119 | 183 | 2 | 61 |
E2F_TDP 2 keksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek 61 + +sL+ lt+ ++ l +++e+ +l++va + + + k k RR YD++ VL aln+++ model.Picochlorum_contig_84.g502.t1 119 NPSSLGGLTRGIMSHLANQPEQSHELDQVAIAVLGLdadvpNLKPKLRRAYDVASVLIALNIVQD 183 5689**************************999765799999999*****************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.5E-13 | 30 | 98 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 2.5E-11 | 32 | 97 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 4.72E-8 | 33 | 96 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 1.8E-11 | 35 | 97 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 2.3E-6 | 117 | 184 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 9.8E-5 | 118 | 207 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 6.8E-6 | 121 | 182 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MSEELKGNEE MEGALEVVMK ELVPDDAGKK KGRRQTLRML TAHFLGQYGA DVGVEIHVDD 60 AAEKLDTVRR RVYDIMAVFA EVGVVSKAGK SKYTWHGQKG AEKVGNGGKG PSSHMKGKNP 120 SSLGGLTRGI MSHLANQPEQ SHELDQVAIA VLGLDADVPN LKPKLRRAYD VASVLIALNI 180 VQDCTAKFPQ EDNVSHAKPK RCLMWRGVHG IQDAIKEAKD MNFNLSQQHN QPLSEAAAGH 240 EYYPYMQRFF PMPFPAQGGP PVFATTSMND GTGREVPTDA TMHYQQYMPD YLSLSAMSDF 300 ASQQNQQGLP NMMPGHMLFP IDIKSGSMSD ASGQQYEPQQ WMMQYFASMG KDMALPSDAK 360 HHPQNS* |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP4186 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01330.1 | 1e-16 | DP-E2F-like protein 3 |