PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_84.g502.t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family E2F/DP
Protein Properties Length: 367aa    MW: 40367.8 Da    PI: 6.7575
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_84.g502.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP43.74.4e-143497371
                              E2F_TDP  3 eksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                                         +++Lr+lt +fl  +      +++++++a++L   d+   rRR+YDi+ V+  +++++k  k++++w+g
  model.Picochlorum_contig_84.g502.t1 34 RQTLRMLTAHFLGQYGADVGVEIHVDDAAEKL---DT--VRRRVYDIMAVFAEVGVVSKAGKSKYTWHG 97
                                         679*************9999************...66..8***************************98 PP

2E2F_TDP24.83.6e-08119183261
                              E2F_TDP   2 keksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek 61 
                                          + +sL+ lt+  ++ l +++e+  +l++va + +       + k k RR YD++ VL aln+++ 
  model.Picochlorum_contig_84.g502.t1 119 NPSSLGGLTRGIMSHLANQPEQSHELDQVAIAVLGLdadvpNLKPKLRRAYDVASVLIALNIVQD 183
                                          5689**************************999765799999999*****************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-133098IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.5E-113297IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.72E-83396IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.8E-113597IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.3E-6117184IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013729.8E-5118207IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023196.8E-6121182IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MSEELKGNEE MEGALEVVMK ELVPDDAGKK KGRRQTLRML TAHFLGQYGA DVGVEIHVDD  60
AAEKLDTVRR RVYDIMAVFA EVGVVSKAGK SKYTWHGQKG AEKVGNGGKG PSSHMKGKNP  120
SSLGGLTRGI MSHLANQPEQ SHELDQVAIA VLGLDADVPN LKPKLRRAYD VASVLIALNI  180
VQDCTAKFPQ EDNVSHAKPK RCLMWRGVHG IQDAIKEAKD MNFNLSQQHN QPLSEAAAGH  240
EYYPYMQRFF PMPFPAQGGP PVFATTSMND GTGREVPTDA TMHYQQYMPD YLSLSAMSDF  300
ASQQNQQGLP NMMPGHMLFP IDIKSGSMSD ASGQQYEPQQ WMMQYFASMG KDMALPSDAK  360
HHPQNS*
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41861012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01330.11e-16DP-E2F-like protein 3