PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_84.g407.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family AP2
Protein Properties Length: 367aa    MW: 40548.6 Da    PI: 6.9137
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_84.g407.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.64.6e-113888156
                                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                                         +gy+GV+ + +++r++A++++      + k+ +lg +++a  Aa a + a+ +++ge
  model.Picochlorum_contig_84.g407.t1 38 KGYRGVTHHIRTNRFEAHLWE------NgKQLYLGGYDSAHLAALAFDIAAIRYRGE 88
                                         59****************888......44**************************97 PP
2AP238.23.5e-12131178253
                                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                                           +kGV+++  +grW+A+I     +g +k+ +lg ++t+ +Aaka+++a+ + 
  model.Picochlorum_contig_84.g407.t1 131 IFKGVTRHQ-KGRWEARIGQT--QG-KKYQYLGLHDTEVQAAKAYDKAAIER 178
                                          69****999.7******8883..23.6**********99*********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.02E-143895No hitNo description
SMARTSM003808.1E-1739101IPR001471AP2/ERF domain
PROSITE profilePS5103214.8423995IPR001471AP2/ERF domain
PfamPF008475.5E-63988IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-123996IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.3E-114095IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-14130189IPR016177DNA-binding domain
CDDcd000182.53E-19130187No hitNo description
SMARTSM003801.7E-21131194IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-14131188IPR001471AP2/ERF domain
PROSITE profilePS5103214.486131188IPR001471AP2/ERF domain
PfamPF008477.7E-8131177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MGRGKRSRGS TFQDDDPDFA PCGKLMGKRM YAEAELGKGY RGVTHHIRTN RFEAHLWENG  60
KQLYLGGYDS AHLAALAFDI AAIRYRGEQA VTNYDQKWYT GLYETLKKYT PEAIVAGLRR  120
HSKGESVQSS IFKGVTRHQK GRWEARIGQT QGKKYQYLGL HDTEVQAAKA YDKAAIERNG  180
VSAVTNFHLV CYLDTLKEEQ KKEALKKKII TEEDIANHQR MQGGEEETEK ESDAIPEVEK  240
LHINDKDENL PDVEQIERRT TTTTEDALAG VLFDTVVKGE ITDLSPQTVL PDKTKSAIPL  300
EGASATKPSR GPKIIPRSSL GDGGEAEWPL DGTTMPSPTV LAGLGKKLDE HCAAENGCAV  360
ARNLFA*
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.27e-40AP2 family protein