PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_83.g429.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family ERF
Protein Properties Length: 412aa    MW: 43910.5 Da    PI: 8.6068
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_83.g429.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.9e-18185235256
                                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                                          +++GVr+++ +g+W+AeIrdp+    r +r +lg+f++  eAa a++aa+++++g+
  model.Picochlorum_contig_83.g429.t1 185 KHRGVRQRP-WGKWAAEIRDPT----RgARLWLGTFDSSVEAALAYDAAARRIRGA 235
                                          79*******.**********84....35*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-12185234IPR001471AP2/ERF domain
PROSITE profilePS5103222.234185242IPR001471AP2/ERF domain
CDDcd000189.67E-20185241No hitNo description
SuperFamilySSF541719.15E-20185242IPR016177DNA-binding domain
SMARTSM003802.0E-33185248IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-28186243IPR001471AP2/ERF domain
PRINTSPR003678.3E-9186197IPR001471AP2/ERF domain
PRINTSPR003678.3E-9208224IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MSDLHPLQGE DGGAVKVEPE VGSVVQAEPE GAPMDIPVEQ EAVPLSIRTS RRRKSRRDDE  60
IVGGSLPNTA AHNFHHPMVS RFSKEYDSSP YSTSPGQASG YQSSAYGTSP SMLGREGNIP  120
LGTSPYGSEA SSKKSLPSSL THGSPMDRYI HKAASGGISK RSGTPSRPPL LPGGASPPSS  180
AKSGKHRGVR QRPWGKWAAE IRDPTRGARL WLGTFDSSVE AALAYDAAAR RIRGASAITN  240
YNEEETEELV KLYGAPVLPD PDEPKESRGS KPMNGGSKHT KSSRYTSNIE KTHLTGSAPS  300
SYADFGGRRS ARQSARPRID FSQIAESSES AGISMDDDDD MMVGSMDVGE DEEIAKILLN  360
MKVGDYGPPE STSQDSGTQS TRPKPLPSQA GKRYGTRASA GLRVSRNYAD M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-19181241162ATERF1
3gcc_A2e-19181241162ATERF1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14954SRRRKS
25057RRRKSRRD
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1321540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.17e-15ERF family protein