PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | model.Picochlorum_contig_83.g427.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
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Family | NF-YB | ||||||||
Protein Properties | Length: 220aa MW: 25000.9 Da PI: 3.7892 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 28.9 | 2.7e-09 | 123 | 192 | 26 | 95 |
NF-YB 26 kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 ++ kd+ + + fi ++t+ a+d c + kr+t+ +d++ l + f ++vepl++++ ++e ++ model.Picochlorum_contig_83.g427.t1 123 QVNKDSLVAFDVAAKLFIHYLTCAANDLCIEAKRQTLGVQDVFQGLEDTEFGEFVEPLRAHFVAFKESKK 192 4556666666667788*************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00125 | 3.9E-8 | 38 | 164 | IPR007125 | Histone H2A/H2B/H3 |
Gene3D | G3DSA:1.10.20.10 | 6.9E-24 | 81 | 202 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.69E-19 | 90 | 201 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MEDDRPEQPG VVGGDIEDIA VGVGEEPMEQ PEEEPQQEEE EEPQQEEEEE PQQEEEEEPQ 60 QEEEEEPQQE EEDEQQEGED EQQQQQQQEE DISFPKSLLK RLVKEQMDQE VCKSKEGAVV 120 DVQVNKDSLV AFDVAAKLFI HYLTCAANDL CIEAKRQTLG VQDVFQGLED TEFGEFVEPL 180 RAHFVAFKES KKKGKRKSED VGVPDDVHKS PKTDNDGAE* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005648182.1 | 7e-27 | hypothetical protein COCSUDRAFT_63166 | ||||
TrEMBL | I0YZ19 | 2e-25 | I0YZ19_COCSC; Uncharacterized protein | ||||
STRING | XP_005648182.1 | 3e-26 | (Coccomyxa subellipsoidea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP3453 | 13 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 1e-20 | nuclear factor Y, subunit B11 |