PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_69.g580.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family MYB
Protein Properties Length: 684aa    MW: 76874.7 Da    PI: 9.4527
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_69.g580.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.37.5e-134384245
                                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
                      Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                                         g W+ eEd ll++  k+ G++ W+ +a+++  g+t+ qc  rw+
  model.Picochlorum_contig_69.g580.t1 43 GVWSDEEDRLLAEWQKKVGNK-WSEVAKHIS-GKTGQQCAQRWR 84
                                         78*******************.*********.***********8 PP
2Myb_DNA-binding51.42.6e-1693138148
                                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                          r++W + Edell ++v+++G+  W+ Iar+++ gRt+ qc  rw  +l
  model.Picochlorum_contig_69.g580.t1  93 RDKWDAHEDELLTNLVAKHGNA-WAEIARHVP-GRTDQQCMGRWKRHL 138
                                          789*******************.*********.***********9886 PP
3Myb_DNA-binding461.2e-14144189148
                                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                          r +W+ eEd +l  ++ ++ +  W++I++ m  gRt+ qc+ rw++++
  model.Picochlorum_contig_69.g580.t1 144 REKWSDEEDVKLCALFSKYDNA-WSSISKAMR-GRTPQQCRTRWHNLK 189
                                          789*******************.*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.773787IPR017930Myb domain
SMARTSM007171.8E-124189IPR001005SANT/Myb domain
PfamPF002491.3E-114384IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-174498IPR009057Homeodomain-like
CDDcd001671.02E-94584No hitNo description
SuperFamilySSF466897.34E-2467140IPR009057Homeodomain-like
PROSITE profilePS5129426.21288142IPR017930Myb domain
SMARTSM007176.1E-1792140IPR001005SANT/Myb domain
CDDcd001672.80E-1295138No hitNo description
PfamPF139219.7E-1896155No hitNo description
Gene3DG3DSA:1.10.10.604.5E-2399146IPR009057Homeodomain-like
SuperFamilySSF466895.8E-22121190IPR009057Homeodomain-like
SMARTSM007172.7E-14143191IPR001005SANT/Myb domain
PROSITE profilePS5129416.188143193IPR017930Myb domain
CDDcd001677.71E-11146189No hitNo description
Gene3DG3DSA:1.10.10.604.0E-17147190IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MAGFSSAEGQ ALGDPSFSRE ERTYLMDHGR AKKRTSTSNG KNGVWSDEED RLLAEWQKKV  60
GNKWSEVAKH ISGKTGQQCA QRWRHRVNPD IKRDKWDAHE DELLTNLVAK HGNAWAEIAR  120
HVPGRTDQQC MGRWKRHLDP SIRREKWSDE EDVKLCALFS KYDNAWSSIS KAMRGRTPQQ  180
CRTRWHNLKS SSFMTKRKED IQKVDMEALE ALLAQHERCL SAARESAMGQ KDEKVEGVGY  240
QKKRKRGRPA KCEGRMGDSG TDVRGRMRGR PRRRTMVSHI ETRSLSFLDC MKVAGSRRSR  300
STCRQRRLNF ESTRHMLKML KDGEESQSDH ALGQFDDCVL QPWSAAKANG RNNIALNNLR  360
WEENGEDDGE IMLPINKANM MVCVSPFPNK HSYEPVVAND ATPPKPKSKR EVLDAHHIPS  420
PLRQSPYAID TYSGESFLGI EDLMGSKTPL SALRHAPKSC FSPALADLLK SPPNNHDMSH  480
VKSIEFQGFG SPAAHYNRAG QLWGQETPSR DFSEVVRCLD ADIEFACERA PNGDFTGNDV  540
AMHETNRAHP ESAPLFTPSG MAMPFHAVDS TPNMAHGSVM MKGNNHEISV VESIPTRYVA  600
VEPTDQSETA KLLPVRLLPS SQTSEQLHLS VGEGIEKTIG TLQNKATLVP VHSNHQQDTL  660
KRRARRLSSA SVRMSLHTLL EKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C8e-22431876158MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-22431876158MYB PROTO-ONCOGENE PROTEIN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263273RGRMRGRPRRR
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.11e-29myb domain protein 3r-4