PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_68.g377.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family CAMTA
Protein Properties Length: 648aa    MW: 72304.6 Da    PI: 6.3542
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_68.g377.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1130.37.5e-41381534116
                                 CG-1   4 e.kkrwlkneeiaaiLenfekheltl..elktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLK 74 
                                          + ++ wlknee++a+Le+f+  +l+   +++t+p+ g+l +++rk+ r fr+D ++w+kk d kt++E+hekLK
  model.Picochlorum_contig_68.g377.t1  38 KaESSWLKNEEVLAVLEKFQGLDLSWpqQAATQPEGGRLYIFSRKVCRAFRNDKHTWRKKNDNKTIKETHEKLK 111
                                          44899***************99986557999******************************************* PP

                                 CG-1  75 vggvevlycyYahseenptfqrrcywlLeeelekivlvhyle 116
                                          v+  e+l+cyYah+++n  +qrrcyw+L+++++++v+vhyl 
  model.Picochlorum_contig_68.g377.t1 112 VQDKETLNCYYAHADRNDGLQRRCYWILDKRYDDVVMVHYLC 153
                                          ****************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143750.99932160IPR005559CG-1 DNA-binding domain
SMARTSM010769.8E-4035155IPR005559CG-1 DNA-binding domain
PfamPF038596.4E-3839152IPR005559CG-1 DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MKDLVISRIP PGEEKRQAVP LDPEAAELGE NVMEIVKKAE SSWLKNEEVL AVLEKFQGLD  60
LSWPQQAATQ PEGGRLYIFS RKVCRAFRND KHTWRKKNDN KTIKETHEKL KVQDKETLNC  120
YYAHADRNDG LQRRCYWILD KRYDDVVMVH YLCTSTSRVA GRVSMGQAGS MTPSGSGLSA  180
GKSSRPKREA AMRKKRYSEI FGEDSVELAG TNLKREEPVQ EQRMKEAPRH DAREDLEPYD  240
SFLERIPSDM GVDPSLYPGD LEVSAAQIVR VADSSPRKSQ MGDDVDRKLS FGKYDLKALL  300
EGSTSPNKIS SMTEEEYLVR GFSKVDSLGY LRNFSFETKM GNGDVFDGHT GGAGVTFLHR  360
GNGSTELDKF ARSDSYNEWQ PSSSTDPESS GVRQNEKVET LRRFVIPGSD SSLSSFASQG  420
FDQSNNLRKR SNPTSTVPPK SMDVRMTEAA ILSQDANIRR RDMLLSKTRE ARETTLPSHS  480
YSKMSQDEEL IEPPVLFRTG SHIVKGIQEQ SLSPRKYPHE QTMLSKESPE KAASLFKQMS  540
IDETGRAAAT ETLHQGEPVY VVDELLPGDS LAGFGSVEEA PGTSIDDVTH PSAQGSRDPS  600
FTSMVQNPFV LGQPGTQEQR QHDSVGGGDK EQDFDFQKAL KNSSRKR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP513289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.26e-32ethylene induced calmodulin binding protein