PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | model.Picochlorum_contig_67.g401.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
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Family | SBP | ||||||||
Protein Properties | Length: 378aa MW: 41909.4 Da PI: 9.6005 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 106.1 | 2.5e-33 | 80 | 156 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrk 75 Cqv+gC + ++key++r+k+C h +a+ lv+g++ rfCqqC+rf lsefD +krsCr+rLa+hn+rrrk model.Picochlorum_contig_67.g401.t1 80 CQVPGCVRPIDNMKEYYKRYKICPYHMEANFLLVEGQSIRFCQQCGRFQLLSEFDGDKRSCRKRLARHNSRRRK 153 ************************************************************************** PP --- CS SBP 76 kqa 78 ++a model.Picochlorum_contig_67.g401.t1 154 SEA 156 976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 26.307 | 77 | 154 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 5.6E-28 | 77 | 141 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.01E-30 | 79 | 156 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.3E-30 | 80 | 153 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009554 | Biological Process | megasporogenesis | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MSSDSSSSSE SDDSRTQSSD SNGIREVNGN QPTHITFPEV PGFSNALDAY VCQNTAPGPR 60 YRRGRGRSFF KDSPVGKNSC QVPGCVRPID NMKEYYKRYK ICPYHMEANF LLVEGQSIRF 120 CQQCGRFQLL SEFDGDKRSC RKRLARHNSR RRKSEAEGGR IVQQDQVPSR SNHEQGTPVP 180 SRKTAYELIN SALQNVLEAM RVDGLHETPD AAVVKVRSLV ALMELQQALQ ELSRNRSRLK 240 SQESPSRHSL PPEILQHAMS RLLQQRQVPV LQTSAMGPQM QQLNMPGAIT SPPIDPLAMG 300 SQINPQLAMM QNFSPMNPTQ VMPPQQAAMP QGLTPHIPSH GGDSRQDVLP QNGAQSSEPT 360 PDKLSILLET LKQASKK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul5_A | 1e-21 | 80 | 161 | 6 | 87 | squamosa promoter binding protein-like 7 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 148 | 153 | SRRRKS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00090 | SELEX | Transfer from AT1G02065 | Download |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP20 | 12 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 2e-24 | squamosa promoter binding protein-like 8 |