PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_63.g227.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family bHLH
Protein Properties Length: 270aa    MW: 30142.7 Da    PI: 6.1086
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_63.g227.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.2e-09112160454
                                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                          a+  rE++RR+++Ns+feeL ++      +++ K +  +i   A++ +++L
  model.Picochlorum_contig_63.g227.t1 112 AKADREKKRREKLNSCFEELAQVCGGE--GTGYKTDRLSIIVDAIRVVRQL 160
                                          6789******************99997..799**************99999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-11107178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.604108160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.44E-7111164No hitNo description
PfamPF000101.4E-6112160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-7114166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-9114185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MAMSENVSEP GKEEAQEGQE CGGREKHTNT LNLLDGDNLS WIDLDDKTLQ CLVGGMPLPQ  60
VGQMDEAGPS DPSKQVHWIP DMGKQEWEKR KSADSDEVNG KSKKSRSAAA VAKADREKKR  120
REKLNSCFEE LAQVCGGEGT GYKTDRLSII VDAIRVVRQL RVEVNQLRQL NKFLEERTGT  180
LERERAQVMY QQYPGVQHHM VQQVPQPQVA SHSFVDHNSN GLGKHDQQYG MMAPQQQQQQ  240
QPHGDVVQGK PWLPASNLSE DEKLRPPAA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117122KKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011396941.11e-41Transcription factor
TrEMBLA0A087SEA63e-40A0A087SEA6_AUXPR; Transcription factor
STRINGA0A087SEA66e-41(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP564977