PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | model.Picochlorum_contig_62.g343.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
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Family | NF-YB | ||||||||
Protein Properties | Length: 138aa MW: 15255.5 Da PI: 5.0593 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 60.3 | 4.6e-19 | 3 | 96 | 3 | 96 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfed 78 ++d +lP a +++ +k+ +P++ k++ ++ ++v c + i ++s a++ ++r+kr ti+++d++ a +lGfe model.Picochlorum_contig_62.g343.t1 3 DDDLMLPKATIVKAIKERVPEDMKVGGETSDLVVSCCTTLIHVLSSTANEISERNKRATIQPEDVVQAAKELGFES 78 67899*********************************************************************** PP NF-YB 79 yveplkvylkkyrelege 96 y+ l++ l +++ ++e model.Picochlorum_contig_62.g343.t1 79 YIPVLEKALDEWKSEKKE 96 *******99999876665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.9E-34 | 3 | 133 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.16E-28 | 4 | 134 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.9E-11 | 8 | 70 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MFDDDLMLPK ATIVKAIKER VPEDMKVGGE TSDLVVSCCT TLIHVLSSTA NEISERNKRA 60 TIQPEDVVQA AKELGFESYI PVLEKALDEW KSEKKEAKNL KNKKAASLNG MSQEELIKMQ 120 QQLFQQAKDK AQGGAME* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 1e-28 | 3 | 128 | 11 | 133 | Transcription Regulator NC2 beta chain |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP2422 | 15 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.4 | 2e-20 | nuclear factor Y, subunit B13 |