PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_62.g264.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family MYB
Protein Properties Length: 501aa    MW: 57937 Da    PI: 8.6968
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_62.g264.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding331.4e-10278320245
                                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
                      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                          g++++eE ++l+++v+q+G ++W ++a++++ gR + +c   + 
  model.Picochlorum_contig_62.g264.t1 278 GPFSQEENQKLLEYVEQHGEHSWILVAERLP-GRVPIDCLRQYE 320
                                          79*****************************.***999987776 PP
2Myb_DNA-binding51.42.4e-16391436148
                                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                          +g+W++ Ede l++av+  G++ W+++a+ ++ gRt+ qc++r+ ++l
  model.Picochlorum_contig_62.g264.t1 391 KGPWSKSEDEMLLKAVAISGKE-WSKVAKLVP-GRTEVQCRERYVNHL 436
                                          79********************.*********.***********9986 PP
3Myb_DNA-binding35.52.3e-11445489347
                                          SS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHH CS
                      Myb_DNA-binding   3 rWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqky 47 
                                          ++T+eE ++ v+ v+++ g+  W++Ia+ ++ gRt+ qc+  +qk 
  model.Picochlorum_contig_62.g264.t1 445 AFTKEERDIVVNEVAKYTGRiPWAKIAKLLP-GRTDRQCRKVYQKI 489
                                          79*****************************.************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.014180273IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-9183199IPR009057Homeodomain-like
PROSITE profilePS500906.493231271IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.5E-9243276IPR009057Homeodomain-like
SuperFamilySSF466893.1E-16252322IPR009057Homeodomain-like
PROSITE profilePS5129413.258272327IPR017930Myb domain
SMARTSM007174.8E-7276325IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-14277321IPR009057Homeodomain-like
PfamPF002493.1E-9278320IPR001005SANT/Myb domain
CDDcd001673.65E-6279322No hitNo description
PROSITE profilePS500906.017328379IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.8E-4329378IPR009057Homeodomain-like
SMARTSM007170.023332381IPR001005SANT/Myb domain
PfamPF139213.5E-5336377No hitNo description
PROSITE profilePS5129421.48386440IPR017930Myb domain
SMARTSM007171.1E-17390438IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-19390438IPR009057Homeodomain-like
SuperFamilySSF466891.68E-22390486IPR009057Homeodomain-like
PfamPF002491.5E-15391436IPR001005SANT/Myb domain
CDDcd001671.18E-10393436No hitNo description
Gene3DG3DSA:1.10.10.604.5E-11439490IPR009057Homeodomain-like
SMARTSM007171.3E-6442492IPR001005SANT/Myb domain
PROSITE profilePS5129410.831444494IPR017930Myb domain
CDDcd001672.20E-7445490No hitNo description
PfamPF002492.4E-9445489IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MGKRSSEEGV QPFELDELEA LRQQNAAYEA ENEEIRKLLG EDFVYIDRTE IKDSSDDEIK  60
HHHDESVLYL DEAMPSWSKK ARVERALEVN IQLQDRVKLL LSTVEKSRVS RDAIQDMLDL  120
SVLRKRKKAS VPHTYSVGNT KMEYSGKSWF WAHANCEKLP GYKDASSMIF ISKHLPLVNR  180
SGAWAPDECE SLRKGVEEIA KERMTNEMLK SIDTIEDFEK MQRPMRSLSL ESSKILEIAE  240
TFTDGEWATL ASRHLASRTG VECKLQWMNR LNPLRKDGPF SQEENQKLLE YVEQHGEHSW  300
ILVAERLPGR VPIDCLRQYE KIQVEKQQSD KKNVDWTERD TSKLQKLVAE HGQAWKRIES  360
EFGGAWPANK LMYMWRKHQQ GTEGGILVAK KGPWSKSEDE MLLKAVAISG KEWSKVAKLV  420
PGRTEVQCRE RYVNHLDPNV QSEVAFTKEE RDIVVNEVAK YTGRIPWAKI AKLLPGRTDR  480
QCRKVYQKIK RDRERAKKKG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-173364799144MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-173364799144MYB PROTO-ONCOGENE PROTEIN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123127RKRKK
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP42351111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.32e-26myb domain protein 4r1